Locus 6407

Sequence ID 3R_DroMel_CAF1
Location 16,784,522 – 16,784,614
Length 92
Max. P 0.930625
window10447

overview

Window 7

Location 16,784,522 – 16,784,614
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 97.10
Mean single sequence MFE -25.63
Consensus MFE -24.47
Energy contribution -24.03
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -2.29
Structure conservation index 0.95
SVM decision value 1.21
SVM RNA-class probability 0.930625
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16784522 92 + 27905053
GCGAUUUCAUAAUUCCGCACACAGCAUAAAAAAAAGAGGGGCACAGGAAAAAGUCUUGGAAAAUUUUCCUGCCGCUCUUUUCGAACUUGCGC
((((.(((........((.....))......(((((((.((((..((((((..((...))...)))))))))).))))))).))).)))).. ( -27.00)
>DroSec_CAF1 17076 92 + 1
GCGAUUUCAUAAUUCCGCACACAGCAUAAAAAAAAGAGGGGCACAGGAAAAAGUCUUGGAAAAUUUUCCUGACGCUCUUUUCGAACUUGCGC
((((.(((........((.....)).........((((((((.((((((((..((...))...))))))))..)))))))).))).)))).. ( -24.10)
>DroEre_CAF1 13006 91 + 1
GCGAUUUCAUAAUUCCGCACACAGCAUAAAA-AAAGGGGGGCACAGGAAAAAGUCUUGGAAAAUUUUCCUGCCGCUCUUUUCGAGCUUGCGC
((((.(((........((.....)).....(-((((((.((((..((((((..((...))...)))))))))).))))))).))).)))).. ( -25.80)
>consensus
GCGAUUUCAUAAUUCCGCACACAGCAUAAAAAAAAGAGGGGCACAGGAAAAAGUCUUGGAAAAUUUUCCUGCCGCUCUUUUCGAACUUGCGC
((((.(((........((.....)).........((((((((.((((((((..((...))...))))))))..)))))))).))).)))).. (-24.47 = -24.03 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:48 2006