| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,783,784 – 16,783,880 |
| Length | 96 |
| Max. P | 0.987623 |
| Location | 16,783,784 – 16,783,880 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -23.80 |
| Energy contribution | -23.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.02 |
| Structure conservation index | 1.00 |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.987623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16783784 96 + 27905053 ACAAGUUCAAUACUGCUAACGGGGUAGUUUUCUGCGAAAGCCCCCAAAACACAAUACGCAACGCCAAGCGCAAAAAUUGUGUAAUAGCACCCAAAC .............(((((..((((..((((((...))))))))))...(((((((.(((........))).....)))))))..)))))....... ( -23.80) >DroSec_CAF1 16328 96 + 1 ACAAGUUCAAUACUGCUAACGGGGUAGUUUUCUGCGAAAGCCCCCAAAACACAAUACGCAACGCCAAGCGCAAAAAUUGUGUAAUAGCACCCAAAC .............(((((..((((..((((((...))))))))))...(((((((.(((........))).....)))))))..)))))....... ( -23.80) >DroEre_CAF1 12266 96 + 1 ACAAGUUCAAUACUGCUAACGGGGUAGUUUUCUGCGAAAGCCCCCAAAACACAAUACGCAACGCCAAGCGCAAAAAUUGUGUAAUAGCACCCAAAC .............(((((..((((..((((((...))))))))))...(((((((.(((........))).....)))))))..)))))....... ( -23.80) >consensus ACAAGUUCAAUACUGCUAACGGGGUAGUUUUCUGCGAAAGCCCCCAAAACACAAUACGCAACGCCAAGCGCAAAAAUUGUGUAAUAGCACCCAAAC .............(((((..((((..((((((...))))))))))...(((((((.(((........))).....)))))))..)))))....... (-23.80 = -23.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:47 2006