Locus 6405

Sequence ID 3R_DroMel_CAF1
Location 16,780,992 – 16,781,111
Length 119
Max. P 0.690516
window10445

overview

Window 5

Location 16,780,992 – 16,781,111
Length 119
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 96.08
Mean single sequence MFE -28.90
Consensus MFE -27.93
Energy contribution -27.36
Covariance contribution -0.56
Combinations/Pair 1.09
Mean z-score -1.55
Structure conservation index 0.97
SVM decision value 0.33
SVM RNA-class probability 0.690516
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16780992 119 + 27905053
CAAAGUCAGUAGCUAGUUGACUUUGACACCACGCAAAUUCGUAAAGUCAUCAACGCUGCUCCGCCUAUUGAUUUUGCCUAAAAGUCAUAAUUGGCAGUGGAACAGACCUUUUUUGUUUA
(((((((((.......)))))))))...((((........(((((((((.....((......))....)))))))))......((((....)))).))))((((((.....)))))).. ( -30.00)
>DroSec_CAF1 13320 119 + 1
CAAAGCCAGUAGCUAGUUGACUUUGACACCACGCAAAUUUCUAAAGUCAUCAGUGCUGCUCCGCCUAUUGAUUUUGCCUAAAAGUCAUAAUUGGCAGUGGAACAGACCUUUUUUGUUUA
((..(((((((((....((((((((................)))))))).....))))).........(((((((.....)))))))....))))..))(((((((.....))))))). ( -28.59)
>DroSim_CAF1 15018 119 + 1
CAAAGCCAGUAGCUAGUUGACUUUGACACCACGCAAAUUUCUAAAGUCAUCAGCGCUGCUCCGCCUAUUGAUUUUGCCUAAAAGUCAUAAUUGGCAGUGGAACAGACCUUUUUUGUUUA
((..(((((((((....((((((((................)))))))).....))))).........(((((((.....)))))))....))))..))(((((((.....))))))). ( -27.89)
>DroEre_CAF1 9198 119 + 1
CAAAGCCAGUAGCUAGUUGACUUUGACACCACGCAAAUUUGUAAAGUCAUCAGCGCUGCUCCGCCUAUUGAUUUUGUCUAAAAGUCAUAAUUGGCAGUGGAAUAGACCCUUUUUGUUCA
((..(((((((((....((((((((.((...........)))))))))).....))))).........(((((((.....)))))))....))))..))(((((((.....))))))). ( -29.10)
>consensus
CAAAGCCAGUAGCUAGUUGACUUUGACACCACGCAAAUUUCUAAAGUCAUCAGCGCUGCUCCGCCUAUUGAUUUUGCCUAAAAGUCAUAAUUGGCAGUGGAACAGACCUUUUUUGUUUA
((..(((((((((....((((((((................)))))))).....))))).........(((((((.....)))))))....))))..))(((((((.....))))))). (-27.93 = -27.36 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:46 2006