| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,780,000 – 16,780,099 |
| Length | 99 |
| Max. P | 0.836933 |
| Location | 16,780,000 – 16,780,099 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Mean single sequence MFE | -29.69 |
| Consensus MFE | -29.69 |
| Energy contribution | -29.69 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.39 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.836933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16780000 99 + 27905053 CGCUUCUUUACAAUGGGAAUGGCGUAAAUUAGACGAGCUAUGCUCGUAAAUCUAUUGUCAUAAACGCCUACGAGGAGCGACGAGCAAAUUGCUUCGAAU ((((((((.....((((.((((((........((((((...))))))........)))))).....)))).)))))))).(((((.....)).)))... ( -29.69) >DroSec_CAF1 12361 99 + 1 CGCUUCUUUACAAUGGGAAUGGCGUAAAUUAGACGAGCUAUGCUCGUAAAUCUAUUGUCAUAAACGCCUACGAGGAGCGACGAGCAAAUUGCUUCGAAU ((((((((.....((((.((((((........((((((...))))))........)))))).....)))).)))))))).(((((.....)).)))... ( -29.69) >DroSim_CAF1 14039 99 + 1 CGCUUCUUUACAAUGGGAAUGGCGUAAAUUAGACGAGCUAUGCUCGUAAAUCUAUUGUCAUAAACGCCUACGAGGAGCGACGAGCAAAUUGCUUCGAAU ((((((((.....((((.((((((........((((((...))))))........)))))).....)))).)))))))).(((((.....)).)))... ( -29.69) >DroEre_CAF1 8229 99 + 1 CGCUUCUUUACAAUGGGAAUGGCGUAAAUUAGACGAGCUAUGCUCGUAAAUCUAUUGUCAUAAACGCCUACGAGGAGCGACGAGCAAAUUGCUUCGAAU ((((((((.....((((.((((((........((((((...))))))........)))))).....)))).)))))))).(((((.....)).)))... ( -29.69) >consensus CGCUUCUUUACAAUGGGAAUGGCGUAAAUUAGACGAGCUAUGCUCGUAAAUCUAUUGUCAUAAACGCCUACGAGGAGCGACGAGCAAAUUGCUUCGAAU ((((((((.....((((.((((((........((((((...))))))........)))))).....)))).)))))))).(((((.....)).)))... (-29.69 = -29.69 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:44 2006