Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,375,187 – 2,375,289 |
Length | 102 |
Max. P | 0.987329 |
Location | 2,375,187 – 2,375,289 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.25 |
Mean single sequence MFE | -42.22 |
Consensus MFE | -23.09 |
Energy contribution | -21.93 |
Covariance contribution | -1.16 |
Combinations/Pair | 1.59 |
Mean z-score | -2.49 |
Structure conservation index | 0.55 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987329 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2375187 102 + 27905053 CUGCUGC---------ACCCCCUGCUGCACUCCCUGUUGCACCCCUUGCUGCAGUCCGUGCUGCGGUCCGUGCUGCAGCCCCUGCUGCUCUCCUUGCGG---------AGGGUCAAAGUG ((((.((---------((...((((.((((...((((.(((.....))).))))...)))).))))...)))).)))).((((.((((.......))))---------))))........ ( -42.40) >DroGri_CAF1 149940 102 + 1 CAGCUGC---------AGUCCGUGCUGUGGACCAUGUUGCGGGCCCUGUUGCGGUCCUUGCUGUGGACCCUGCUGCAGUCAGGGCUGCAAUUCUUGUUG---------CGGCUCCAAAUU .((((((---------((((((.....)))))((.(((((((.((((((((((((((.......))))).....)))).))))))))))))...)).))---------)))))....... ( -45.50) >DroSec_CAF1 87788 102 + 1 CUGCUGC---------ACCCCCUGCUGCACUCCCUGUUGCACCCCUUGCUGCAGUCCGUGCUGCGGUCCGUGCUGCAGCCCCUGCUGCUCCCCUUGCGG---------CGGGUCAAAGUG ((((.((---------((...((((.((((...((((.(((.....))).))))...)))).))))...)))).))))..((((((((.......))))---------))))........ ( -45.30) >DroEre_CAF1 81997 102 + 1 CUGCUGC---------ACCCCCUGCUGCACUCCCUGUUGCACACCUUGCUGCACUCCGUGCUGCAGUCCGUGCUGCAGCCCCUGCUGCUCCCCUUGCGG---------CGGCUCAAAGUG ((((.((---------((...((((.((((....(((.(((.....))).)))....)))).))))...)))).))))...(((((((.......))))---------)))......... ( -39.40) >DroWil_CAF1 141034 120 + 1 AUGCUGCAAUCCUUGCGGCCCUUGCUGCAGUCCUUGCUGCGCCCCAUGCUGUGCACCAUGCUGCGCCCCAUGUUGUUCCCCCUGCUGCAGCCCCUGUGGACCCACAUGUGGAUCAAAAUG ..((((((.....))))))....((((((((.......(((...((((..(((((......)))))..)))).))).......))))))))(((((((....)))).).))......... ( -37.84) >DroYak_CAF1 75924 102 + 1 CUGCUGC---------ACCCCCUGCUGCACACCCUGUUGCACCCCUUGCUGCACUCCGUGCUGCAGUCCGUGCUGCAGCCCCUGCUGCUCCCCUUGCGG---------CGGGUCAAAGUG ((((.((---------((...((((.((((....(((.(((.....))).)))....)))).))))...)))).))))..((((((((.......))))---------))))........ ( -42.90) >consensus CUGCUGC_________ACCCCCUGCUGCACUCCCUGUUGCACCCCUUGCUGCACUCCGUGCUGCGGUCCGUGCUGCAGCCCCUGCUGCUCCCCUUGCGG_________CGGGUCAAAGUG ................((((.((((.((((....(((.(((.....))).)))....)))).)))).((((...(((((....))))).......))))..........))))....... (-23.09 = -21.93 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:06 2006