Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 380,922 – 381,015 |
Length | 93 |
Max. P | 0.957263 |
Location | 380,922 – 381,015 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 76.23 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -8.74 |
Energy contribution | -9.77 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.06 |
Mean z-score | -2.81 |
Structure conservation index | 0.37 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 380922 93 - 27905053 CGAUAAAGCCAG---------GCUACGAGCGAAAAUUGAAGCGUCAAAGUCACACAAAAGUCAGGCAGACACAUUUGUUA-GAAAUAACAAAUGUGAUUUCCU .......(((.(---------(((..(.(.((...((((....))))..)).).)...)))).)))...(((((((((((-....)))))))))))....... ( -25.40) >DroVir_CAF1 73316 88 - 1 UGAAAA---------------GAGACACGCGCAAAAUGAAGACAGAAAGUCACACAAAAGUUGGGUUGACAAAUUUGUGAACAAAUAACAAAUGUGCUUUGCC ......---------------.......(((((.......(((.....)))........((((.(((.(((....))).)))...))))...)))))...... ( -16.60) >DroSec_CAF1 56270 93 - 1 CGAUAAAGCCAG---------GCUACGAGCGCAAAUUGAAGCGUCAAAGUCACACAAAAGUCAGGCAGACACAUUUGUUA-GAAAUAAGAAAUGUGAUUUCCU .......(((.(---------(((..((.(((........)))))...(.....)...)))).)))...(((((((.(((-....))).)))))))....... ( -23.20) >DroSim_CAF1 56761 93 - 1 CGAUAAAGCCAG---------GCUACGAGCGCAAAUUGAAGCGUCAAAGUCACACAAAAGUCAGGCAGACACAUUUGUUA-GAAAUAACAAAUGUGAUUUCCU .......(((.(---------(((..((.(((........)))))...(.....)...)))).)))...(((((((((((-....)))))))))))....... ( -27.10) >DroEre_CAF1 43018 102 - 1 CGAUAAAGCCAGGUCUGCCAAGCUACGAGCGCUAAUUGAAGCGUCAAAGUCACACAAAAGUCAGACAGACACAUUUGUUA-GAAAUAACAAAUGUGAUUUCUU ......(((..((....))..)))..((.((((......))))))...(((..((....))..)))...(((((((((((-....)))))))))))....... ( -27.40) >DroMoj_CAF1 60401 85 - 1 UGAA------------------AGACACGCGCGAGAUGGAGACAGAAAGUCACACGAAAGUCGUGCUGACAAAUUUCUGAACAAAUAACAAAUGUGAGUGAUC ....------------------...(((.((((....(....)(((((((((((((.....)))).))))...)))))..............)))).)))... ( -20.20) >consensus CGAUAAAGCCAG_________GCUACGAGCGCAAAUUGAAGCGUCAAAGUCACACAAAAGUCAGGCAGACACAUUUGUUA_GAAAUAACAAAUGUGAUUUCCU ..............................................(((((((......(((.....)))..((((((((.....)))))))))))))))... ( -8.74 = -9.77 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:03 2006