Locus 6398

Sequence ID 3R_DroMel_CAF1
Location 16,775,319 – 16,775,437
Length 118
Max. P 0.581429
window10431

overview

Window 1

Location 16,775,319 – 16,775,437
Length 118
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 96.47
Mean single sequence MFE -34.91
Consensus MFE -32.10
Energy contribution -33.10
Covariance contribution 1.00
Combinations/Pair 1.03
Mean z-score -1.57
Structure conservation index 0.92
SVM decision value 0.10
SVM RNA-class probability 0.581429
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16775319 118 - 27905053
GUGUGUAAUUAGCAGCGCACUACUCGGCCCAAUGACACCAAUUCCGGAAGGAGGGAAAGCACGGAAAAUGGAAAAAUAAACGUGUUAUGCAGGGUAGUUUCGUUCUAGAGCUCGAGAU
((((((........))))))..((((((((.......((...(((....))).))..((((((.................)))))).....))))(((((.......))))))))).. ( -33.23)
>DroSec_CAF1 7799 118 - 1
GUGUGUAAUUAGCAGCGCACUCCUCGGCCCAAUGACACCAAUUCCGGAUGGGGGGAAAGCACGGAAAAUGGAAAAAUAAACGUGUUAUUCAGGGUAGUUUCGUUCUAGGGCUCGAGAU
((((((........))))))..(((((((((((((.(((..((((....))))(((.((((((.................)))))).)))..)))....)))))...)))).)))).. ( -34.23)
>DroSim_CAF1 9448 118 - 1
GUGUGUAAUUAGCAGCGCACUACUCGGCCCAAUGACACCAAUUCCGGAAGGAGGGAAAGCACGGAAAAUGGAAAAAUAAACGUGUUAUUCAGGGUAGUUUCGUUCUAGGGCUCGAGAU
((((((........))))))..(((((((((((((.(((..((((....))))(((.((((((.................)))))).)))..)))....)))))...)))).)))).. ( -39.53)
>DroEre_CAF1 3556 117 - 1
GUGUGUAAUUAGCAG-GCACUACUGGGCCCAAUGACACCAAUUCCGGAAGGGGGGUAAGCACGGAAAAUGGAAAAAUAAACGUGUUAUUCAGGGUAGUUUCGUUCUAGGGCUCGAGAU
((.(((.....))).-))....(((((((((((((.(((...(((....)))((((((.((((.................))))))))))..)))....)))))...)))))).)).. ( -32.63)
>consensus
GUGUGUAAUUAGCAGCGCACUACUCGGCCCAAUGACACCAAUUCCGGAAGGAGGGAAAGCACGGAAAAUGGAAAAAUAAACGUGUUAUUCAGGGUAGUUUCGUUCUAGGGCUCGAGAU
((((((........))))))..(((((((((((((.(((..((((....))))(((.((((((.................)))))).)))..)))....)))))...)))).)))).. (-32.10 = -33.10 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:33 2006