Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,772,913 – 16,773,026 |
Length | 113 |
Max. P | 0.927081 |
Location | 16,772,913 – 16,773,026 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.13 |
Mean single sequence MFE | -44.72 |
Consensus MFE | -36.92 |
Energy contribution | -37.67 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.11 |
Mean z-score | -1.80 |
Structure conservation index | 0.83 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.822490 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16772913 113 + 27905053 GCAAAAGGAUGGGCAAAGUGGAAAGU-------GGGUUGCUCUGCAGCUGAGCGAAAAGUCGUUUCGCCUAAGCAACCGCAGCCCCUUUGGAGCUGCUUCCUUGUUUGUGCUCGUGUCGA (((..((.((..((((...((((...-------.(((((((..(..((.((((((....)))))).)))..)))))))(((((((....)).)))))))))))))..)).))..)))... ( -42.30) >DroSec_CAF1 4983 120 + 1 GCAAAAGGAUGGGCAAACUGGGAGGUGGGAAGUGGGUUGCUCUGCAGCUGAGCGAAAAGUCGUUUGGCCUAAGCAACCGCAGCCCCUUUGGAGCUGCUUCCUUGUUUGUGCUCGUGUCGA ......((((((((((((.((((((..(((((.(((((((..(((.((..(((((....)))))..))....)))...)))))))))))....)..)))))).)))..))))))).)).. ( -49.50) >DroSim_CAF1 6439 113 + 1 ACAAAAGGAUGGGCAAACUGGGAGGU-------GGGUUGCUCUGCAGCUGAGCGAAAAGUCGUUUGGCCUAAGCAACCGCAGCCCCUUUGGAGCUGCUUCCUUGUUUGUGCUCGUGUCGA ......((((((((((((.(((((..-------.(((((((..(..((..(((((....)))))..)))..)))))))(((((((....)).)))))))))).)))..))))))).)).. ( -47.40) >DroEre_CAF1 1177 112 + 1 GCAAAGCGAUGGGAAAACAGGGAAGC-------GGGGUGCUCUGCAGCUGAGGGAAAAGCCGUUUGGCC-AAGCAACCGCAGCCCGUUUGGAGCUACUUCCUCGCUUGUGCUCGUGUCGA ......(((((.((..(((((.((((-------(((.(((..(((.((..((((.....)).))..)).-..)))...))).)))))))((((....))))...)))))..)).))))). ( -39.70) >consensus GCAAAAGGAUGGGCAAACUGGGAAGU_______GGGUUGCUCUGCAGCUGAGCGAAAAGUCGUUUGGCCUAAGCAACCGCAGCCCCUUUGGAGCUGCUUCCUUGUUUGUGCUCGUGUCGA (((..((.(..(((((...((((...........(((((((.....((..((((......))))..))...)))))))(((((((....)).))))))))))))))..).))..)))... (-36.92 = -37.67 + 0.75)
Location | 16,772,913 – 16,773,026 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.13 |
Mean single sequence MFE | -37.67 |
Consensus MFE | -32.67 |
Energy contribution | -32.93 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.13 |
Mean z-score | -1.98 |
Structure conservation index | 0.87 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16772913 113 - 27905053 UCGACACGAGCACAAACAAGGAAGCAGCUCCAAAGGGGCUGCGGUUGCUUAGGCGAAACGACUUUUCGCUCAGCUGCAGAGCAACCC-------ACUUUCCACUUUGCCCAUCCUUUUGC .........(((.....(((((.((((((((...))))))))((((((((.(((....(((....)))....)))...)))))))).-------.................))))).))) ( -36.20) >DroSec_CAF1 4983 120 - 1 UCGACACGAGCACAAACAAGGAAGCAGCUCCAAAGGGGCUGCGGUUGCUUAGGCCAAACGACUUUUCGCUCAGCUGCAGAGCAACCCACUUCCCACCUCCCAGUUUGCCCAUCCUUUUGC .......((...(((((..(((.((((((((...))))))))((((((((.(((....(((....)))....)))...))))))))...........)))..)))))....))....... ( -37.70) >DroSim_CAF1 6439 113 - 1 UCGACACGAGCACAAACAAGGAAGCAGCUCCAAAGGGGCUGCGGUUGCUUAGGCCAAACGACUUUUCGCUCAGCUGCAGAGCAACCC-------ACCUCCCAGUUUGCCCAUCCUUUUGU ...(((.(((..(((((..(((.((((((((...))))))))((((((((.(((....(((....)))....)))...)))))))).-------...)))..)))))......))).))) ( -38.10) >DroEre_CAF1 1177 112 - 1 UCGACACGAGCACAAGCGAGGAAGUAGCUCCAAACGGGCUGCGGUUGCUU-GGCCAAACGGCUUUUCCCUCAGCUGCAGAGCACCCC-------GCUUCCCUGUUUUCCCAUCGCUUUGC .........(((.(((((((((......)))((((((((((((((((...-((((....)))).......)))))))))(((.....-------)))..))))))).....))))))))) ( -38.70) >consensus UCGACACGAGCACAAACAAGGAAGCAGCUCCAAAGGGGCUGCGGUUGCUUAGGCCAAACGACUUUUCGCUCAGCUGCAGAGCAACCC_______ACCUCCCAGUUUGCCCAUCCUUUUGC .......((...(((((..(((.(((((((.....)))))))((((((((.(((....(((....)))....)))...))))))))...........)))..)))))....))....... (-32.67 = -32.93 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:32 2006