| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,771,910 – 16,772,008 |
| Length | 98 |
| Max. P | 0.980777 |
| Location | 16,771,910 – 16,772,008 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.33 |
| Mean single sequence MFE | -29.70 |
| Consensus MFE | -21.94 |
| Energy contribution | -22.12 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.980777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16771910 98 + 27905053 UGGACCCA----------------------AAAAGGGUGCUCCGCUUCCGUUCCCACCGUCCCCUCCACGACUCAAUAAAUAUGCAUGAGCAGGAGGCCAAGGGGCUUCAAUUAAAUUUA ...((((.----------------------....))))(((((((((((.........(((........)))..........(((....)))))))))...))))).............. ( -26.10) >DroSec_CAF1 3992 95 + 1 CGGACCCA----------------------AAAAGGGUGCUCCGCGCCCGUUCCCAC---CCCCUCCACGACUCAAUAAAUAUGCAUGAGCAGGAGGCCAAGGGGCUUCAAUUAAAUUUA .((((((.----------------------....((((((...))))))........---..(((((..(.((((...........))))).))))).....))).)))........... ( -26.50) >DroSim_CAF1 5456 95 + 1 CGAACCCG----------------------AAAAGGGUGCUCCGCGCCCGUUCCCAC---CCCCUCCUCGACUCAAUAAAUAUGCAUGAGCAUGAGGCCAAGGGGCUUCAAUUAAAUUUA .......(----------------------((..((((((...))))))........---((((((((((.((((...........))))..)))))...))))).)))........... ( -26.80) >DroEre_CAF1 166 116 + 1 UGGACCCACUUUGCCCCUAAAACAGCUCCCAAAAGGGAGCUGCAC-CCCAUUCCCAC---CCCCUCCACGACUCAAUAAAUAUGCAUGAGCAGGAGGCCAAGGGGCUCCAAUUAAAUUUA (((((((.(((.((((((....((((((((....))))))))...-...........---.........(.((((...........)))))))).))).)))))).)))).......... ( -39.40) >consensus CGGACCCA______________________AAAAGGGUGCUCCGCGCCCGUUCCCAC___CCCCUCCACGACUCAAUAAAUAUGCAUGAGCAGGAGGCCAAGGGGCUUCAAUUAAAUUUA .((((((...........................(((((.....))))).............(((((....((((...........))))..))))).....))).)))........... (-21.94 = -22.12 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:26 2006