Locus 6394

Sequence ID 3R_DroMel_CAF1
Location 16,771,218 – 16,771,338
Length 120
Max. P 0.590436
window10423

overview

Window 3

Location 16,771,218 – 16,771,338
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -51.50
Consensus MFE -51.50
Energy contribution -51.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 1.00
SVM decision value 0.11
SVM RNA-class probability 0.590436
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16771218 120 + 27905053
GGACCCAACCAGACGAGGACUGUCGAUGAACUGUGCGUCCAGCAGCUGUUGCUGCCCGGUGUUAUACGGGCCAUAGCACAGUUGGCACAGGCGGCGCGUCCCCAGGCACAGUGGGCCAUC
((.((((......(..(((((((((.....((((((......(((((((.((((((((........)))))...)))))))))))))))).))))).))))...)......))))))... ( -51.50)
>DroSec_CAF1 3280 120 + 1
GGACCCAACCAGACGAGGACUGUCGAUGAACUGUGCGUCCAGCAGCUGUUGCUGCCCGGUGUUAUACGGGCCAUAGCACAGUUGGCACAGGCGGCGCGUCCCCAGGCACAGUGGGCCAUC
((.((((......(..(((((((((.....((((((......(((((((.((((((((........)))))...)))))))))))))))).))))).))))...)......))))))... ( -51.50)
>DroSim_CAF1 4740 120 + 1
GGACCCAACCAGACGAGGACUGUCGAUGAACUGUGCGUCCAGCAGCUGUUGCUGCCCGGUGUUAUACGGGCCAUAGCACAGUUGGCACAGGCGGCGCGUCCCCAGGCACAGUGGGCCAUC
((.((((......(..(((((((((.....((((((......(((((((.((((((((........)))))...)))))))))))))))).))))).))))...)......))))))... ( -51.50)
>consensus
GGACCCAACCAGACGAGGACUGUCGAUGAACUGUGCGUCCAGCAGCUGUUGCUGCCCGGUGUUAUACGGGCCAUAGCACAGUUGGCACAGGCGGCGCGUCCCCAGGCACAGUGGGCCAUC
((.((((......(..(((((((((.....((((((......(((((((.((((((((........)))))...)))))))))))))))).))))).))))...)......))))))... (-51.50 = -51.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:26 2006