| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,769,702 – 16,769,810 |
| Length | 108 |
| Max. P | 0.788441 |
| Location | 16,769,702 – 16,769,810 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.28 |
| Mean single sequence MFE | -32.27 |
| Consensus MFE | -26.49 |
| Energy contribution | -28.60 |
| Covariance contribution | 2.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.788441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16769702 108 + 27905053 UCGCCUCGGGCAGCAAAUACUCGCAUUU------------CUUGACAGUCUUUUCUUCGAGUGCAUUGCGUACUAAUCUGAGUUGAUUUACUCAUUAUUCGCUUAGACGAAAGUCUCGUA ..(((...)))(((.((((..((((...------------(((((.((......))))))).....))))........(((((......))))).)))).))).((((....)))).... ( -25.20) >DroSec_CAF1 1718 120 + 1 UCGCCUCGAGCAGCAAGUACUCGCAUUACUUUGCACCAGACUUGACAGUCUUUUCUUCGAGUGCAUUGCGUACUAAUCUGAGUUGAUUUACUCAUUAUUCGCUUAGACGAAAGUCUCGUA .......((((.(((((((((((((......)))...(((((....))))).......)))))).)))).........(((((......)))))......))))((((....)))).... ( -35.80) >DroSim_CAF1 3193 120 + 1 UUGCCUCGAGCAGCAAGUACUCGCAUCACUUUGCAGCAGACUUGACAGUCUUUUCUUCGAGUGCAUUGCGUACUAAUCUGAGUUGAUUUACUCAUUAUUCGCUUAGACGAAAGUCUCGUA .......((((.(((((((((((((......)))...(((((....))))).......)))))).)))).........(((((......)))))......))))((((....)))).... ( -35.80) >consensus UCGCCUCGAGCAGCAAGUACUCGCAUUACUUUGCA_CAGACUUGACAGUCUUUUCUUCGAGUGCAUUGCGUACUAAUCUGAGUUGAUUUACUCAUUAUUCGCUUAGACGAAAGUCUCGUA .......((((.(((((((((((((......)))...(((((....))))).......)))))).)))).........(((((......)))))......))))((((....)))).... (-26.49 = -28.60 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:20 2006