Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,768,248 – 16,768,482 |
Length | 234 |
Max. P | 0.986995 |
Location | 16,768,248 – 16,768,362 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.84 |
Mean single sequence MFE | -41.37 |
Consensus MFE | -37.72 |
Energy contribution | -37.50 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.61 |
Structure conservation index | 0.91 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16768248 114 + 27905053 ------CUUGUAAGUGCUCAUUAACAUAAGCCGCUGAUGUCGUUGCGCACAUUGUUGCCAUUCCGGUGGCUCCACGGACUUUUGUCUGCCCUUUUUGGGCGCUGGGAGUCGAGUGGCCCG ------.......((((.((...((((.((...)).))))...)).))))......(((((((....((((((..((((....))))((((.....))))....)))))))))))))... ( -40.10) >DroSec_CAF1 1 119 + 1 UUACAGCUUGUAAGUGCUCAUUAACAUAAGCCGCUGAUGUCGUUGUGCACAUUGUUGCCAUUCCGGUGGCUCCACGGACUUUUGUCUGCCCUU-UUGGGCGCUGGGAGCCGAGUGGCCAG ((((.....))))((((.((...((((.((...)).))))...)).))))......(((((((....((((((..((((....))))((((..-..))))....)))))))))))))... ( -44.00) >DroSim_CAF1 1 99 + 1 --------------------UUAACAUAAGCCGCUGAUGUCGUUGUGCACAUUGUUGCCAUUCCGGUGGCUCCGCGGACUUUUGUCUGCCCUU-UUGGGCGCUGGGAGCCGAGUGGCCAG --------------------.........((((((....(((..(((((......)).)))..)))(((((((((((((....))))((((..-..))))))..)))))))))))))... ( -40.00) >consensus ______CUUGUAAGUGCUCAUUAACAUAAGCCGCUGAUGUCGUUGUGCACAUUGUUGCCAUUCCGGUGGCUCCACGGACUUUUGUCUGCCCUU_UUGGGCGCUGGGAGCCGAGUGGCCAG .............................(((((((((((.(.....))))))...(((.....)))((((((..((((....))))((((.....))))....)))))).))))))... (-37.72 = -37.50 + -0.22)
Location | 16,768,248 – 16,768,362 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.84 |
Mean single sequence MFE | -34.87 |
Consensus MFE | -30.59 |
Energy contribution | -30.70 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.51 |
Structure conservation index | 0.88 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642176 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16768248 114 - 27905053 CGGGCCACUCGACUCCCAGCGCCCAAAAAGGGCAGACAAAAGUCCGUGGAGCCACCGGAAUGGCAACAAUGUGCGCAACGACAUCAGCGGCUUAUGUUAAUGAGCACUUACAAG------ (((.((((..((((.....(((((.....)))).).....)))).)))).....)))...((....)).(((((((..........)))((((((....))))))...))))..------ ( -32.20) >DroSec_CAF1 1 119 - 1 CUGGCCACUCGGCUCCCAGCGCCCAA-AAGGGCAGACAAAAGUCCGUGGAGCCACCGGAAUGGCAACAAUGUGCACAACGACAUCAGCGGCUUAUGUUAAUGAGCACUUACAAGCUGUAA ...((((.(((((((((...((((..-..)))).(((....))).).))))))....)).))))....((((........))))((((.((((((....))))))........))))... ( -38.60) >DroSim_CAF1 1 99 - 1 CUGGCCACUCGGCUCCCAGCGCCCAA-AAGGGCAGACAAAAGUCCGCGGAGCCACCGGAAUGGCAACAAUGUGCACAACGACAUCAGCGGCUUAUGUUAA-------------------- ..((((.((.((((((..((((((..-..)))).(((....))).))))))))..((...(((((......))).)).)).....)).))))........-------------------- ( -33.80) >consensus CUGGCCACUCGGCUCCCAGCGCCCAA_AAGGGCAGACAAAAGUCCGUGGAGCCACCGGAAUGGCAACAAUGUGCACAACGACAUCAGCGGCUUAUGUUAAUGAGCACUUACAAG______ ..((((.((.((((((..((((((.....)))).(((....))).))))))))..((...(((((......))).)).)).....)).))))............................ (-30.59 = -30.70 + 0.11)
Location | 16,768,322 – 16,768,442 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.77 |
Mean single sequence MFE | -42.93 |
Consensus MFE | -38.59 |
Energy contribution | -38.37 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.02 |
Mean z-score | -2.25 |
Structure conservation index | 0.90 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.803001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16768322 120 + 27905053 UUUGUCUGCCCUUUUUGGGCGCUGGGAGUCGAGUGGCCCGGAGUCCGGACUUGGGGCUCUCGACUCGCGCUGAUUGUCGUAUUUAAAUUAAUUUCAAUACAACGACAAAGAGUACGAAUC ((((((.((((.....))))((.(.((((((((.(((((.((((....)))).))))))))))))).))).....((.(((((.(((....))).))))).))))))))........... ( -49.70) >DroSec_CAF1 81 119 + 1 UUUGUCUGCCCUU-UUGGGCGCUGGGAGCCGAGUGGCCAGGAGUCCGGACUUGGGGCUCUCGACUCGCGCUGAUUGUCGUAUUUAAAUUAAUUUCAAUACAACAACAAAGAGUACGAAUC (((((((((((..-..))))((.(.(((.((((.((((..((((....))))..)))))))).))).)))((.((((.(((((.(((....))).))))).))))))...)).))))).. ( -39.10) >DroSim_CAF1 61 119 + 1 UUUGUCUGCCCUU-UUGGGCGCUGGGAGCCGAGUGGCCAGGAGUCCGGACUUGGGGCUCUCGACUCGCGCUGAUUGUCGUAUUUAAAUUAAUUUCAAUACAACGACAAAGAGUACGAAUC ((((((.((((..-..))))((.(.(((.((((.((((..((((....))))..)))))))).))).))).....((.(((((.(((....))).))))).))))))))........... ( -40.00) >consensus UUUGUCUGCCCUU_UUGGGCGCUGGGAGCCGAGUGGCCAGGAGUCCGGACUUGGGGCUCUCGACUCGCGCUGAUUGUCGUAUUUAAAUUAAUUUCAAUACAACGACAAAGAGUACGAAUC (((((((((((.....))))((.(.(((.((((.((((..((((....))))..)))))))).))).)))((.((((.(((((.(((....))).))))).))))))...)).))))).. (-38.59 = -38.37 + -0.22)
Location | 16,768,322 – 16,768,442 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.77 |
Mean single sequence MFE | -42.90 |
Consensus MFE | -41.11 |
Energy contribution | -40.67 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -3.65 |
Structure conservation index | 0.96 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.986995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16768322 120 - 27905053 GAUUCGUACUCUUUGUCGUUGUAUUGAAAUUAAUUUAAAUACGACAAUCAGCGCGAGUCGAGAGCCCCAAGUCCGGACUCCGGGCCACUCGACUCCCAGCGCCCAAAAAGGGCAGACAAA ............(((((((((((((.(((....))).)))))))).....((..((((((((.((((..(((....)))..))))..))))))))...))((((.....)))).))))). ( -46.20) >DroSec_CAF1 81 119 - 1 GAUUCGUACUCUUUGUUGUUGUAUUGAAAUUAAUUUAAAUACGACAAUCAGCGCGAGUCGAGAGCCCCAAGUCCGGACUCCUGGCCACUCGGCUCCCAGCGCCCAA-AAGGGCAGACAAA ((((((..((....(((((((((((.(((....))).))))))))))).))..))))))(.(((((...(((((((....))))..))).))))).)...((((..-..))))....... ( -40.90) >DroSim_CAF1 61 119 - 1 GAUUCGUACUCUUUGUCGUUGUAUUGAAAUUAAUUUAAAUACGACAAUCAGCGCGAGUCGAGAGCCCCAAGUCCGGACUCCUGGCCACUCGGCUCCCAGCGCCCAA-AAGGGCAGACAAA ((((((..((..(((((((....(((((.....)))))..)))))))..))..))))))(.(((((...(((((((....))))..))).))))).)...((((..-..))))....... ( -41.60) >consensus GAUUCGUACUCUUUGUCGUUGUAUUGAAAUUAAUUUAAAUACGACAAUCAGCGCGAGUCGAGAGCCCCAAGUCCGGACUCCUGGCCACUCGGCUCCCAGCGCCCAA_AAGGGCAGACAAA ............(((((((((((((.(((....))).)))))))).....((..((((((((.(((...(((....)))...)))..))))))))...))((((.....)))).))))). (-41.11 = -40.67 + -0.44)
Location | 16,768,362 – 16,768,482 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -32.33 |
Consensus MFE | -31.85 |
Energy contribution | -31.97 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.17 |
Structure conservation index | 0.99 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16768362 120 - 27905053 ACUUUUAUGGGCCAGUGUCUUUUGAUUCUAUAAUUUGCAUGAUUCGUACUCUUUGUCGUUGUAUUGAAAUUAAUUUAAAUACGACAAUCAGCGCGAGUCGAGAGCCCCAAGUCCGGACUC ........(((((((.(((....))).))..........(((((((..((..(((((((....(((((.....)))))..)))))))..))..))))))).).))))............. ( -30.10) >DroSec_CAF1 120 120 - 1 ACUUUUAUGGGCCAGUGUCUUUUGAUUCUAUAAUUUGCUUGAUUCGUACUCUUUGUUGUUGUAUUGAAAUUAAUUUAAAUACGACAAUCAGCGCGAGUCGAGAGCCCCAAGUCCGGACUC ........((((.((.(((....))).))........(((((((((..((....(((((((((((.(((....))).))))))))))).))..))))))))).))))............. ( -33.10) >DroSim_CAF1 100 120 - 1 ACUUUUAUGGGCCAGUGUCUUUUGAUUCUAUAAUUUGCUUGAUUCGUACUCUUUGUCGUUGUAUUGAAAUUAAUUUAAAUACGACAAUCAGCGCGAGUCGAGAGCCCCAAGUCCGGACUC ........((((.((.(((....))).))........(((((((((..((..(((((((....(((((.....)))))..)))))))..))..))))))))).))))............. ( -33.80) >consensus ACUUUUAUGGGCCAGUGUCUUUUGAUUCUAUAAUUUGCUUGAUUCGUACUCUUUGUCGUUGUAUUGAAAUUAAUUUAAAUACGACAAUCAGCGCGAGUCGAGAGCCCCAAGUCCGGACUC ........((((.((.(((....))).))........(((((((((..((..(((((((....(((((.....)))))..)))))))..))..))))))))).))))............. (-31.85 = -31.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:19 2006