| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,767,656 – 16,767,773 |
| Length | 117 |
| Max. P | 0.841061 |
| Location | 16,767,656 – 16,767,773 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 71.53 |
| Mean single sequence MFE | -31.95 |
| Consensus MFE | -11.70 |
| Energy contribution | -11.73 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841061 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16767656 117 - 27905053 GAUGACAAUCAAACCACUU--CCUUCGGCGGCUCUCAUCGCAUUUCGAGCCCCAGCUGCGCUGGCAAUUGGCAAUCCACAAGUAAAAGACGAUGACAGCCGCAUUUGUCAUCUGAUCAA ((((((((...........--......((((((.(((((.........((((((((...))))).....))).........((.....))))))).))))))..))))))))....... ( -36.51) >DroPse_CAF1 46927 98 - 1 GGUGGCAAUCAGCCGGCCUACCCCUCGCCCGCCCACAGC--------UGCCGCAGCUGCUGUGGC-------AAUCCACAA------GCCAAUGACAGCCAUAUUUGUCAUUUUAUCAA ((((((.....((.(((.........))).))(((((((--------.((....)).))))))).-------.........------)))((((((((......))))))))..))).. ( -31.70) >DroSim_CAF1 65096 117 - 1 GAUGACAAUCUAACCACUU--CCUUCGGCGGCUCUCAUCGCAUUUGGAGCCCCAGCUGCGAUGGCAAUUGGCAAUCCACAAGUAAAAGACGAUGGCAGCAGCAUUUGUCAUCUGAUCAA ((((((((...........--.....((.(((((.((.......))))))))).(((((....((.((((...................)))).)).)))))..))))))))....... ( -36.01) >DroEre_CAF1 62199 117 - 1 GAUGACAAUCAAACCACUU--CCUUGGGCGGCUCUCAUCGGGAUUCGAGUCUCAGCUGCGAUGGCAAUUCGCAAUGCACAAGUAAAAGACGAUGGCAGCCACAUUUGUCAUCUGAUCAA ((((((((.....(((...--...)))(.((((.((((((((((....))))).(((((((.......)))))..)).............))))).)))).)..))))))))....... ( -37.70) >DroAna_CAF1 41646 111 - 1 GGUGGCAAUCAUACAGCUC--CUUCCGGCGGCACUCAUCGCAUUUCACACCACAUCUGCGAUGGCAAUCCACAAUCCACA------AGACGAUGGCAGCCAUAUUUGUCAUUUUAUCAA ((((((((.......(((.--.....)))(((...(((((((..............)))))))((.(((...........------....))).)).)))....))))))))....... ( -24.20) >DroPer_CAF1 47325 98 - 1 GGUGGCAAUCAGCCGGCCUACCCCCCUCCCGCCCACAGC--------UGCCGCAGCUGCUCUGGC-------AAUCCACAA------GCCAAUGACAGCCAUAUUUGUCAUUUUAUCAA ((((((.....)))................(((..((((--------((...))))))....)))-------.........------)))((((((((......))))))))....... ( -25.60) >consensus GAUGACAAUCAAACCACUU__CCUUCGGCGGCUCUCAUCGCAUUUCGAGCCCCAGCUGCGAUGGCAAUU_GCAAUCCACAA_____AGACGAUGACAGCCACAUUUGUCAUCUGAUCAA ((((((((...................(((((......................)))))..((((................................))))...))))))))....... (-11.70 = -11.73 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:14 2006