Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,370,996 – 2,371,087 |
Length | 91 |
Max. P | 0.874305 |
Location | 2,370,996 – 2,371,087 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 88.96 |
Mean single sequence MFE | -29.80 |
Consensus MFE | -24.04 |
Energy contribution | -24.68 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.12 |
Mean z-score | -1.81 |
Structure conservation index | 0.81 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.874305 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2370996 91 + 27905053 CACGCACGCACCUCCGCAAAACAGCACGCAACUUUGUUUGCGAAUGUACGGGUGAAAUCGCCUACGGCGAACCAAGUGUGUGGAACCGGAA-- (((((((.(((((..(((.....(((.(((....))).)))...)))..)))))...(((((...))))).....))))))).........-- ( -30.50) >DroSec_CAF1 83615 91 + 1 CACGCACGCACCUCCGCAAAACAGCACGCAACUUUGUUUGCGAAUGUACGGGUGAAAUCGCCUACGGCGAACCAAGUGUGUGGAUCCGGAA-- (((((((.(((((..(((.....(((.(((....))).)))...)))..)))))...(((((...))))).....))))))).........-- ( -30.50) >DroSim_CAF1 76298 91 + 1 CACGCACGCACCUCCGCAAAACAGCACGCAACUUUGUUUGCGAAUGUACGGGUGAAAUCGCCUACGGCGAACCAAGUGUGUGGAUCCGGAA-- (((((((.(((((..(((.....(((.(((....))).)))...)))..)))))...(((((...))))).....))))))).........-- ( -30.50) >DroEre_CAF1 77117 93 + 1 CACGCACGCACCUCCGCAAAACAGCACGCAACUUUGUGUGCGAAUGUACAGGUGGAGUCCCCUACGGCGAACAAAGUGUGUGGAACCGGAAUA ..(((((((..((((((...((((((((((....)))))))...)))....))))))((((....)).)).....)))))))........... ( -31.50) >DroYak_CAF1 71720 87 + 1 CACGCACGCAUCUCCGCAAAACAGCACGCAACUUUGUUUGCAAAGGUACAGGUGAAGUUCCCUAUGGCGAACGAAGAGUGC------GGAAUC ..(((((((......))..............((((((((((..(((.((.......))..)))...)))))))))).))))------)..... ( -26.00) >consensus CACGCACGCACCUCCGCAAAACAGCACGCAACUUUGUUUGCGAAUGUACGGGUGAAAUCGCCUACGGCGAACCAAGUGUGUGGAACCGGAA__ (((((((.(((((..(((.....(((.(((....))).)))...)))..)))))...(((((...))))).....)))))))........... (-24.04 = -24.68 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:05 2006