Locus 6388

Sequence ID 3R_DroMel_CAF1
Location 16,766,190 – 16,766,282
Length 92
Max. P 0.976943
window10408

overview

Window 8

Location 16,766,190 – 16,766,282
Length 92
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 84.50
Mean single sequence MFE -23.52
Consensus MFE -18.04
Energy contribution -17.85
Covariance contribution -0.19
Combinations/Pair 1.20
Mean z-score -2.57
Structure conservation index 0.77
SVM decision value 1.78
SVM RNA-class probability 0.976943
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16766190 92 - 27905053
UUUUCCUAUCCAUUUUGCCAACCCUACCCA--------CUGCAUCAAAGCAACUGAGAGGCGAGCUUCCAUUUCCCGCGGCUUGUCUUUAAUGGCGAAUU
.............(((((((..........--------.(((......)))....(((((((((((.(........).)))))))))))..))))))).. ( -23.80)
>DroSec_CAF1 68996 100 - 1
UUUUCCUAUCUAUUUUGCCAACCCUACCCUCCUACCUCCCGCAUCAAAGCAACUGCGAGGCGAGCUUCCAUUUCCCGCGGCUUGUCUUUAAUGGCGAAUU
.............(((((((...................((((..........))))(((((((((.(........).)))))))))....))))))).. ( -22.40)
>DroSim_CAF1 63663 100 - 1
UUUUCCUAUCCAUUUUGCCAACCCUACCCUCCUGCCCCCCGCAUCAAAGCAACUGCGAGGCGAGCUUCCAUUUCCCGCGGCUUGUCUUUAAUGGCAAAUU
.............(((((((............(((.....))).....((....))((((((((((.(........).))))))))))...))))))).. ( -22.90)
>DroEre_CAF1 60722 99 - 1
UUUUCCUAUCCAUUUCGCCACCGCACCCCUCCAAAAAGG-CUUUCAAAACAACUGCGAGGAGAGGUUCCAUUUCCCGCGGCUUGUCUUUAAUGGUGAAUU
.............(((((((.......(((......)))-........(((((((((.((((((....).)))))))))).))))......))))))).. ( -25.00)
>consensus
UUUUCCUAUCCAUUUUGCCAACCCUACCCUCCUACC_CCCGCAUCAAAGCAACUGCGAGGCGAGCUUCCAUUUCCCGCGGCUUGUCUUUAAUGGCGAAUU
.............(((((((....................((......))......((((((((((.(........).))))))))))...))))))).. (-18.04 = -17.85 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:12 2006