| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,765,567 – 16,765,683 |
| Length | 116 |
| Max. P | 0.859318 |
| Location | 16,765,567 – 16,765,683 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 87.93 |
| Mean single sequence MFE | -42.92 |
| Consensus MFE | -32.12 |
| Energy contribution | -35.87 |
| Covariance contribution | 3.75 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859318 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16765567 116 + 27905053 CGCCCCAUUGCCACACACAUCGCCUCGUUAUCGUUCUCAUUGCAUUACGGUCGACAGGCAAAAUUUGACCCACUUUGUGGGGAGGCUGGAGGUGGUGAUUGUGGAAAGGGGGAAUG ..((((....(((((..(((((((((......((.......))....(((((..((((.....)))).(((((...)))))..))))))))))))))..)))))....)))).... ( -44.50) >DroSec_CAF1 68375 116 + 1 CGCCCCAUUGCCACACACAUCGCCUCGUUAUCGUUCUCAUUGCAUUACGGUCGACAGGCAAAAUUUGACCCACUUUGUGGGGAGCAUGGAGGUGGUGAUUGUGGAAGUGGGGAAUG ..(((((((.(((((..(((((((((..(((.((((((...(((....((((((..........)))))).....))).))))))))))))))))))..))))).))))))).... ( -48.10) >DroSim_CAF1 63038 116 + 1 CGCCCCAUUGCCACACACAUCGCCUCGUUAUCGUUCUCAUUGCAUUACGGUCGACAGGCAAAAUUUGACCCACUUUGUGGGGAGCAUGGAGGUGGUGAUGGUGGAAGUGGGGAAUG ..(((((((.((((.(((((((((((..(((.((((((...(((....((((((..........)))))).....))).)))))))))))))))))).)))))).))))))).... ( -48.40) >DroEre_CAF1 60107 99 + 1 CGC-CCAUUGCCACACACAUCGCCUCGUUAUCGUUCUCAUUGCAUUACGGUCGACAGGCAAAAUUUGACCCACUUUGG-GGGAGGAGGGGAGUGGAGGUGG--------------- ...-((((..((((.......((((.((((((((............))))).))))))).........(((.((((..-....))))))).))))..))))--------------- ( -30.70) >consensus CGCCCCAUUGCCACACACAUCGCCUCGUUAUCGUUCUCAUUGCAUUACGGUCGACAGGCAAAAUUUGACCCACUUUGUGGGGAGCAUGGAGGUGGUGAUGGUGGAAGUGGGGAAUG ..(((((((.((((...(((((((((.....(((((((.(..((....((((((..........)))))).....))..).))))))))))))))))...)))).))))))).... (-32.12 = -35.87 + 3.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:11 2006