Locus 6386

Sequence ID	3R_DroMel_CAF1
Location	16,764,334 – 16,764,434
Length	100
Max. P	0.825339

overview

Window 6

Location	16,764,334 – 16,764,434
Length	100
Sequences	4
Columns	103
Reading direction	forward
Mean pairwise identity	80.40
Mean single sequence MFE	-28.15
Consensus MFE	-16.02
Energy contribution	-17.03
Covariance contribution	1.00
Combinations/Pair	1.21
Mean z-score	-2.30
Structure conservation index	0.57
SVM decision value	0.70
SVM RNA-class probability	0.825339
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16764334 100 + 27905053
UAUCCUGCGCGUGCGGGUUAAUUACUCGGUGAAUCGGCGAAUAUACAUAUAUGCACACAUAUGUAUGUAUGUAUUUACUCGUAUAUGAGGACUGU---AGGAU
.((((((((.((.(((((.....)))).........((((..(((((((((((((......)))))))))))))....))))......).)))))---))))) ( -32.40)
>DroSec_CAF1 67037 97 + 1
UAUCCUGCGCGUGCGGGUUAAUUACUCGGUGAAUCGGCGAAUAU----AUAUGCA--CAUAUAUAUGUAUGUAUGUACUCGUAUAUGAGGGCUGUAGUAGGAU
.(((((((.....(((((.....)))))......((((..((((----(((((((--........))))))))))).((((....)))).))))..))))))) ( -30.30)
>DroSim_CAF1 61713 97 + 1
UAUCCUGCGCGUGCGGGUUAAUUACUCGGUGAAUCGGCGAAUAU----AUAUGCA--CAUAUAUAUGUAUGUAUGUACUCGUAUAUGAGGGCUGUAGUAGGAU
.(((((((.....(((((.....)))))......((((..((((----(((((((--........))))))))))).((((....)))).))))..))))))) ( -30.30)
>DroEre_CAF1 58810 77 + 1
UAUCCUGCGCGUGCGGGUUAAUUACUCGCCGAAUCGGGGA---U----ACAAGUA--CAUAUGUAUG--------------UAGAUGAGGGCUGU---AAGGU
..(((((..((.((((((.....))))))))...))))).---.----.((..((--(((....)))--------------))..))........---..... ( -19.60)
>consensus
UAUCCUGCGCGUGCGGGUUAAUUACUCGGUGAAUCGGCGAAUAU____AUAUGCA__CAUAUAUAUGUAUGUAUGUACUCGUAUAUGAGGGCUGU___AGGAU
.(((((((((((((((((.....)))))((......))...........)))))...(((((((..(((......)))..))))))).........))))))) (-16.02 = -17.03 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:10 2006