| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,762,920 – 16,763,024 |
| Length | 104 |
| Max. P | 0.711070 |
| Location | 16,762,920 – 16,763,024 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 71.50 |
| Mean single sequence MFE | -31.07 |
| Consensus MFE | -12.46 |
| Energy contribution | -13.80 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16762920 104 + 27905053 UAUGAGGG---------------CCAGUUGUGGUAUGUUUUUCACACUUACUUAUCCCUUUUUUAUGUAGAAAUUUAGCCCGGCAGAGUUGGGCAAACAUGCCGAACUGGCAGCUGUAC ....((.(---------------((((((.((((((((((.......((((...............)))).......(((((((...))))))))))))))))))))))))..)).... ( -34.26) >DroSec_CAF1 65712 104 + 1 UAUGGGGG---------------CCAGUUGUGGUAUGUUUUUCACACAUAAGUAAGCGUUUUGUAUGUAGAAAUUUAACCCGGCAAAGUUGGGCAAACAUGCCGAACUGGCAGCUGUAC (((((..(---------------((((((.((((((((((((((((.(((((.......))))).))).)))......((((((...)))))).)))))))))))))))))..))))). ( -36.70) >DroSim_CAF1 60204 104 + 1 UAUGGGGG---------------CCAGUUGUGGUAUGUUUUUCACACUUACUUAUCCUUUUUGUAUGUAGAAAUUUAACCCGGCAAAGUUGGGCAAACAUGCCGAACUGGCAGCUGUAC (((((..(---------------((((((.((((((((((((((((..(((...........)))))).)))......((((((...)))))).)))))))))))))))))..))))). ( -34.40) >DroEre_CAF1 57407 104 + 1 UAUGGGGG---------------CCAGUUGUGGUAUGUUUUUCACACUUAUCCUUUUUUUAUUUAUGUAGGAAUUUAACCUGGCAGAGUUGGGCAAACAUGCCGAACUGGUAGCUGUGC (((((..(---------------((((((.((((((((((..........((((..............))))......((..((...))..)).)))))))))))))))))..))))). ( -31.64) >DroYak_CAF1 41210 119 + 1 UAUGGUGGUAUGGGGGUAUAUGGUGUGCUGUGGUAUGUUUUUUACACUUAUCCUUUUUUUAUUUAUGUAGGAAUUUAACCUGGCAGAGUUGGGCAAACAUGCCGAACUGGUAGCUCUAC ..(((.(.(((.(((((((.....))))).((((((((((..........((((..............))))......((..((...))..)).))))))))))..)).))).).))). ( -27.64) >DroAna_CAF1 37687 96 + 1 UAUGAG---------------------UUUGUGUAUUUUUUCUG--UGUGUUUUCGAGGUGUGUGUGUGUGUGUGUAACAGGAUAUGUGUGUGCAAACACGGUGAGCUCGCAGCUUCCC ......---------------------..............(((--((.((..(((..((((.((..((..(((((......)))))..))..)).))))..))))).)))))...... ( -21.80) >consensus UAUGGGGG_______________CCAGUUGUGGUAUGUUUUUCACACUUAUUUAUCCUUUUUGUAUGUAGAAAUUUAACCCGGCAGAGUUGGGCAAACAUGCCGAACUGGCAGCUGUAC .......................((((((.((((((((((..................((((......))))......((((((...)))))).))))))))))))))))......... (-12.46 = -13.80 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:09 2006