Locus 6384

Sequence ID 3R_DroMel_CAF1
Location 16,762,511 – 16,762,603
Length 92
Max. P 0.893667
window10404

overview

Window 4

Location 16,762,511 – 16,762,603
Length 92
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 86.16
Mean single sequence MFE -27.92
Consensus MFE -22.22
Energy contribution -22.90
Covariance contribution 0.68
Combinations/Pair 1.04
Mean z-score -1.98
Structure conservation index 0.80
SVM decision value 0.98
SVM RNA-class probability 0.893667
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16762511 92 - 27905053
------GUGGGAAAAAACCGGUUAAAAACGGGCUAAAAAGGU-----GCGACAAACGCGUGUCGAAACUGGCGCUUAUCAGAAGGAUGCCAGGUGCCCACGCA
------(((((......(((........)))((.........-----.(((((......)))))...(((((((((......))).)))))))).)))))... ( -29.20)
>DroSec_CAF1 65394 82 - 1
------GUGGGAAAAAACC----------GGGCUAAAAAGAU-----GCGACAAACGCGUGUCGAAACUGGCGCUUAUCAGGAGGAUGCCAGGUGCCCACGCA
------(((((......))----------((((......(((-----(((.(....)))))))....(((((((((......))).))))))..)))).))). ( -28.60)
>DroSim_CAF1 59805 82 - 1
------GUGCGAAAAAACC----------GGGCUAAAAAGGU-----GCGACAAAAGCGUGUCGAAACUGGCGCUUAUCAGAAGGAUGCCAGGUGCCCACGCA
------.((((........----------((((.........-----.(((((......)))))...(((((((((......))).))))))..)))).)))) ( -24.70)
>DroEre_CAF1 57000 86 - 1
------GCGGGAAA-AACC----------AGGCUAAAAAGGUGCGGUGCGACAAACGCGUGUCGAAACUGGCGCUUAUCAGAAGGAUGCCAGGUGCCCACGCA
------((((....-..))----------...........(((.((..(((((......))))....(((((((((......))).)))))))..))))))). ( -29.80)
>DroYak_CAF1 40829 87 - 1
UUUCGUGGGGGAAA-AACC----------AGGCUAAAAAGGU-----GCGACAAACGCGUGUCGAAACUGGCGCUUAUCAGGAGGUUGCCAGGUGCCCACGCA
...((((((.(...-.(((----------..........)))-----.(((((......)))))...(((((((((......))).)))))).).)))))).. ( -27.30)
>consensus
______GUGGGAAAAAACC__________GGGCUAAAAAGGU_____GCGACAAACGCGUGUCGAAACUGGCGCUUAUCAGAAGGAUGCCAGGUGCCCACGCA
......(((((......))..........((((...............(((((......)))))...(((((((((......))).))))))..)))).))). (-22.22 = -22.90 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:08 2006