| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,752,495 – 16,752,586 |
| Length | 91 |
| Max. P | 0.799266 |
| Location | 16,752,495 – 16,752,586 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 74.07 |
| Mean single sequence MFE | -30.35 |
| Consensus MFE | -12.18 |
| Energy contribution | -14.38 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.799266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16752495 91 - 27905053 CCUCUAGAAUCGACCGAGUCUGG---CGUUGGGAUAUU-CUCUUGGCCCUGAUUCCUACGAUUCGGAGGCCCCACCAGAUG---GGGUUUCUUACCCU ......((((((...(((((.((---.((..(((....-.)))..)))).)))))...))))))((((((((((.....))---))))))))...... ( -37.40) >DroSec_CAF1 54926 91 - 1 CCUCUAGAACCGACUGAGUCUGG---UGUUGGGAUAUU-CUCUUGGCCCUGAUUCCUACGAUUCGGAGGACCCACCAGAUG---AGGUUUCUUACCCU .....(((...((((..((((((---((..(((.....-)))..((((((((.((....)).)))).)).)))))))))).---.)))))))...... ( -27.10) >DroSim_CAF1 48332 91 - 1 CCUCUAGAACCGACUGAGUCUGG---UGUUGGGAUAUU-CUCUUGGCCCUGAUUCCUACGAUUCGGAGGCCCCACCAGAUG---AGGUUUCUUACCCU .....(((...((((..((((((---((..(((.....-)))..((((((((.((....)).)))).)))).)))))))).---.)))))))...... ( -30.90) >DroEre_CAF1 47069 91 - 1 CCUCUAGGACCAACUAUGUCUGG---UGUUGGGAUAUU-CUCCUGGCCCUGGUUCUUACGAUUCGAAGGCCCCACCAGAUG---GGGUUUCUUACCCU ....(((......))).((((((---((..((((....-.))))((((.((..((....))..))..)))).))))))))(---((((.....))))) ( -28.80) >DroYak_CAF1 30244 88 - 1 ---CUAGAAUUAACUGAGUCUGG---UGUUGGGAUAUU-CUGUUGGCCCUGAUUCUUACGAUUCGGAGGCCCCACAAGAUG---GGGCUCCUUACCCU ---...(((((....(((((.((---.((..(.(....-.).)..)))).)))))....)))))((((.(((((.....))---)))))))....... ( -30.40) >DroAna_CAF1 28671 85 - 1 UCCCGACUGCCCACGCUCACCGGCUG----GCGAUCUUC---------CUUCUUCGGCCAAUUGGGAUUCUUGCCAAGAUAAGUGGGCUUCUUGCCCG ....((..((((((..((...(((((----(.((.....---------..)).))))))..((((.(....).))))))...)))))).))....... ( -27.50) >consensus CCUCUAGAACCGACUGAGUCUGG___UGUUGGGAUAUU_CUCUUGGCCCUGAUUCCUACGAUUCGGAGGCCCCACCAGAUG___GGGUUUCUUACCCU ......(((((......((((((.......((((......))))((((((((.((....)).)))).))))...)))))).....)))))........ (-12.18 = -14.38 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:01 2006