| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,744,639 – 16,744,734 |
| Length | 95 |
| Max. P | 0.758443 |
| Location | 16,744,639 – 16,744,734 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 83.36 |
| Mean single sequence MFE | -18.97 |
| Consensus MFE | -14.87 |
| Energy contribution | -15.98 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.758443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16744639 95 - 27905053 UUCCGAGCCAUUACGGCCCCUAAGAUUCAUACAUUAAAUUUUAAGUGGCCUUAUAGCAAUGCGCCGUAGUGCAUAUUAAAUAUAUCCAUAAAA----UA--------- ......((...((.(((((.(((((((.........))))))).).)))).))..)).((((((....))))))...................----..--------- ( -17.90) >DroSec_CAF1 47085 95 - 1 UUCCCAGCCAUUGCGGCCCAUAAGAUUCAUACAUUAAAUUUUAAGUGGCUUUAUAGCAAUGCGCCGCAGUGCAUAUUAAAUAUAUCCAUAAAA----UA--------- ......((.((((((((.(((..........((((........))))(((....))).))).)))))))))).....................----..--------- ( -22.00) >DroSim_CAF1 40427 95 - 1 UUCCCAGCCAUUGCGGCCCCUAAGAUUCAUACAUUAAAUUUUAAGUGGCUUUAUAGCAAUGCGCCGUAGUGCAUAUUAAAUAUAUCCAUAAAA----UA--------- ......((.((((((((..............((((........))))(((....))).....)))))))))).....................----..--------- ( -17.90) >DroEre_CAF1 39090 95 - 1 UUCCCUGCCAUUGCGGCCCAUAACACUCAUACAUUAAAUUUUAUGUGGCUUUAUGGCAAUGCGCCGUAGUGCAUAUUAAAUAUUUCCAUAAAA----UA--------- .....((((((...(((((((((.................))))).))))..))))))((((((....))))))...................----..--------- ( -22.63) >DroYak_CAF1 22660 95 - 1 UUUCCUGCCAUUGCGGCCCAUAACUCUUCUUCAUUAAAUUUUAAGUGGCUUUAUAGCAAUGCGCCGUAGUGCAUAUUUAAUAUUUCCAUAAAA----UA--------- .....(((.((((((((.(((..........((((........))))(((....))).))).)))))))))))....................----..--------- ( -20.00) >DroAna_CAF1 21385 105 - 1 UUCCU--CGAAAGCGGCGCA-AACAUUCAUACAUUAAAUAUUAAGUGGCUUUAUAGCAUUGGCCCGUAGUGCAUAUUAAAUUUACACUAAAAAAAAAUAAAUGAAACC ..((.--(....).))....-....(((((..............(.((((..........))))).(((((.............)))))...........)))))... ( -13.42) >consensus UUCCCAGCCAUUGCGGCCCAUAACAUUCAUACAUUAAAUUUUAAGUGGCUUUAUAGCAAUGCGCCGUAGUGCAUAUUAAAUAUAUCCAUAAAA____UA_________ ......((.((((((((.(((..........((((........))))(((....))).))).)))))))))).................................... (-14.87 = -15.98 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:00 2006