Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,743,693 – 16,743,783 |
Length | 90 |
Max. P | 0.952211 |
Location | 16,743,693 – 16,743,783 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 77.81 |
Mean single sequence MFE | -18.28 |
Consensus MFE | -8.27 |
Energy contribution | -8.43 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.25 |
Mean z-score | -2.37 |
Structure conservation index | 0.45 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952211 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16743693 90 + 27905053 AAUCCCGGUAGCACGUGCUGUAUUACCAGCACUCCCC-GAAACCCGUAACCCGAAAUACGAAAUGCGAAACCCAAGCCCAAUCGCAAUCCC------ ......(((.(((.((((((......)))))).....-......((((........))))...)))...)))...((......))......------ ( -17.30) >DroSec_CAF1 46130 89 + 1 AAUACCGGUGGCACGUGCUG-AUUACCAGCACUCCCC-AAAACCCGUCACCCGAAAUCCGAAAUGCGAAACCCAAGCCCAAUCGCAAUCCC------ ....(.((((((..((((((-.....)))))).....-.......)))))).)..........(((((.............))))).....------ ( -19.16) >DroSim_CAF1 39472 89 + 1 AAUCCCGGUGGCACGUGCUG-AUUACCAGCACUCCCC-AAAACCCGUCACCCGAAAUCCGAAAUGCGAAACCCAAGCCCAAUCGCAAUCCC------ ......((((((..((((((-.....)))))).....-.......))))))............(((((.............))))).....------ ( -19.06) >DroEre_CAF1 38110 88 + 1 AAUCCCGGUGGCACGUGCC--AUUACCAGCGCUCCCAGCAAACCCGUAACCAGAAAU-------GCGAAACCCAAUCCCAAUCGCCAUCCCCAUCCC ......((((((..((((.--.......))))............((((........)-------)))................))))))........ ( -16.40) >DroYak_CAF1 21749 69 + 1 AAUCCCGGUGGCACGUGCUG-AUUACCAGCACUCCCC-AAAACCCGUAACCCAAUGU-------ACGAAACGCACACC------------------- ......((((((..((((((-.....)))))).....-......((((........)-------)))....)).))))------------------- ( -19.50) >consensus AAUCCCGGUGGCACGUGCUG_AUUACCAGCACUCCCC_AAAACCCGUAACCCGAAAU_CGAAAUGCGAAACCCAAGCCCAAUCGCAAUCCC______ ......(((.....((((((......))))))............(((.................)))........)))................... ( -8.27 = -8.43 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:59 2006