Locus 6378

Sequence ID 3R_DroMel_CAF1
Location 16,734,935 – 16,735,026
Length 91
Max. P 0.608772
window10394

overview

Window 4

Location 16,734,935 – 16,735,026
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 86.39
Mean single sequence MFE -16.30
Consensus MFE -12.64
Energy contribution -12.20
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -2.23
Structure conservation index 0.78
SVM decision value 0.15
SVM RNA-class probability 0.608772
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16734935 91 - 27905053
CCAAUAUAUUGCAUGUAUCAGUAAAAAAAAAAUAUGUGUGUCAAGACACUCGAUAAUAUGAGAAAAUCGAUAAAUAUAUUGAUAUGCAAAC
........(((((..((((((((..............((((....))))(((((...........)))))......))))))))))))).. ( -17.20)
>DroPse_CAF1 14548 90 - 1
CCAAUAUAUUGGAUGUAUAAUUAAAUA-CGAGUAUAUGUGUCGAGACACGCUAUAAUACGAUCAAGUCGAUAAAUAUAUUGAUAUUCAAAC
.(((((((((...(((((......)))-))..(((((((((....))))).))))...((((...))))...))))))))).......... ( -15.30)
>DroSec_CAF1 36643 84 - 1
CCAAUAUAUUGCAUGUAUCAGUAAAAA-------UAUGUGUCAUGACACUCGAUAAUAUGAGGAAAUCGAUAAAUAUAUUGAUAUGCAAAC
........(((((..((((((((....-------...((((....))))(((((...........)))))......))))))))))))).. ( -17.20)
>DroSim_CAF1 28986 84 - 1
CCAAUAUAUUGCAUGUAUCAGUAAAAA-------UAUGUGUCAAGACACUCGAUAAUAUGAGGAAAUCGAUAAAUAUAUUGAUAUGCAAAC
........(((((..((((((((....-------...((((....))))(((((...........)))))......))))))))))))).. ( -17.20)
>DroEre_CAF1 29511 84 - 1
CCAAUAUAUUGCAUGUAUCAGUAAAAA-------UAUGUGUCAAGACACUCGAUAAUAUGAGAAAACCGAUAAAUAUAUUGAUAUGCAAAA
........((((((((.(((.......-------...((((....)))).........)))......(((((....))))))))))))).. ( -14.41)
>DroPer_CAF1 14528 90 - 1
CCAAUAUAUUGGAUGUAUAAUUAAAUA-CGAGUAUAUGUGUCGAGACACGCUAUAAUACGAGCAAGUCGAUAAAUAUAUUGAUAUUCAAAC
........((((((((((......)))-).(((((((.((((((.....(((........)))...)))))).)))))))...)))))).. ( -16.50)
>consensus
CCAAUAUAUUGCAUGUAUCAGUAAAAA_______UAUGUGUCAAGACACUCGAUAAUAUGAGAAAAUCGAUAAAUAUAUUGAUAUGCAAAC
........((((((((.....................((((....))))..................(((((....))))))))))))).. (-12.64 = -12.20 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:58 2006