| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,732,068 – 16,732,168 |
| Length | 100 |
| Max. P | 0.611633 |
| Location | 16,732,068 – 16,732,168 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.85 |
| Mean single sequence MFE | -30.19 |
| Consensus MFE | -17.10 |
| Energy contribution | -17.68 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.611633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16732068 100 + 27905053 AAUUGGAGAAUCAGUUUAGUUUCGCCAACUGUCUAUGGUUCUCCAUAGGUGCUCUACUUCAGCAAGGAUCUGAACUGGCUCCCAAGUAAGAAAU----------AUUUAU ..((((.((..((((((((.(((........(((((((....)))))))((((.......)))).))).))))))))..)))))).........----------...... ( -30.30) >DroVir_CAF1 7836 107 + 1 AGCUGGAGAAUCAAUUUAGCUUUGCCAAUUGCUUAUGGUUCUCAAUUGGUGCUCUGCUGCAGCAAGGAUCCGAGCUGGCUCCCAAGUUUGUGCCU--UA-GUUCCUUAAU .((((((((((((....(((..(....)..)))..))))))))....(((.....))).))))((((...((((((((...)).))))))..)))--).-.......... ( -27.90) >DroGri_CAF1 12647 110 + 1 AAUUGGAGAAUCAAUUUAGCUUUGCCAACUGCCUUUGGUUCUCGAUUGGCGCCCUCCUGCAGCAGGGCUCCGAGCUGGCUCCCAAGUGUGUCGCUUCUAAACGUUUUUAU .....(((((((((....((..........))..)))))))))....((.(((((.(....).))))).))((((.(((.(......).))))))).............. ( -28.40) >DroEre_CAF1 26700 100 + 1 AGUUGGAGAAUCAGUUCAGUUUCGCCAACUGUCUGUGGUUCUCCAUAGGUGCUUUACUGCAGCAAGGAUCUGAGCUGGCUCCCAAGUAAGCCCU----------AUUUGU (.((((.((..((((((((.(((........(((((((....)))))))(((......)))....))).))))))))..)))))).).......----------...... ( -32.80) >DroYak_CAF1 9857 99 + 1 AAUUGGAGAAUCAGUUUAGUUUCGCCAACUGUCUGUGGUUCUCCAUAGGUGCUUUGCUUCAGCAGGGAUCUGAACUGGCUCCCAAGUAAGCCCC----------AUU-AU ..((((.((..((((((((..((.((...(..((((((....))))))..)...(((....))))))).))))))))..)))))).........----------...-.. ( -32.00) >DroMoj_CAF1 11852 109 + 1 AAUUGGAGAAUCAAUUUAGUUUUGCCAAUUGCCUUUGGUUCUCCAUUGGCGCCCUGCUGCAGCAAGGUUCCGAGCUGGCUCCCAAGUAGUUACCCUAUA-GUUCCAUAGC ...(((((((((((..(((((.....)))))...)))))))))))((((.(((.(((....))).))).))))((((........((((.....)))).-......)))) ( -29.76) >consensus AAUUGGAGAAUCAAUUUAGUUUCGCCAACUGCCUAUGGUUCUCCAUAGGUGCUCUGCUGCAGCAAGGAUCCGAGCUGGCUCCCAAGUAAGUCCC__________AUUUAU ...((((((((((...(((((.....)))))....))))))))))..((.(((.((((..(((.((........)).)))....))))))).))................ (-17.10 = -17.68 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:57 2006