Locus 6376

Sequence ID 3R_DroMel_CAF1
Location 16,731,853 – 16,731,948
Length 95
Max. P 0.644467
window10392

overview

Window 2

Location 16,731,853 – 16,731,948
Length 95
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 74.21
Mean single sequence MFE -25.39
Consensus MFE -14.09
Energy contribution -14.07
Covariance contribution -0.03
Combinations/Pair 1.17
Mean z-score -1.55
Structure conservation index 0.56
SVM decision value 0.23
SVM RNA-class probability 0.644467
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16731853 95 - 27905053
CUGAAAACGGGGACAUGAAGGAGAACAGCUUCGGUGGCUCCUUCAUCGGUUUGCGAAAGAGGAUGCCGAUUCCUAGAAUUGUUUCGUGAU-UUAAA
.((((.(((((((..((((((((....((....))..))))))))(((((...(....).....)))))))))).(((....)))))..)-))).. ( -30.10)
>DroPse_CAF1 11629 96 - 1
CGGAAAAAGGCGACAUGAAGGAGAAUAGCUUGGGUGGCUCCUUCAUUGGCUUGCGAAACAAAAUUCCGAUUCCUAGAAGUGUCAAUCAGUUUUAAU
(((((..((((.(.(((((((((....((....))..)))))))))).))))...........))))).....(((((.((.....)).))))).. ( -24.72)
>DroGri_CAF1 12443 84 - 1
CAGAGAACGGCGACAUGAACGAGAACAGUUUUGGCGGCUCCUUCAUUGGUUUGCGAAACAAAAUCGCUAUGCCUGCGAAUGUUG------------
..........(((((((((.(((....((....))..))).)))...(((..((((.......))))...))).....))))))------------ ( -17.30)
>DroYak_CAF1 9642 95 - 1
CUGAAAACGGGGACAUGAAGGAGAACAGCUUCGGUGGCUCCUUCAUCGGCUUGCGAAAAAGUAUGCCGAUUCCUGGAAUUGAUUCGUGGA-UUAAA
.......((((((..((((((((....((....))..))))))))(((((.(((......))).)))))))))))...((((((....))-)))). ( -36.40)
>DroAna_CAF1 9072 81 - 1
CUGAAAAUGGUGACAUAAAGGAGAAAAGCUUUGGCGGCUCCUUCAUGGGUUUUCGAAACAGAAUUCCAAUUCCUAAAAUAU---------------
.......(((.(((((.((((((....((....))..)))))).)))((..(((......)))..))...)))))......--------------- ( -19.20)
>DroPer_CAF1 11587 96 - 1
CGGAAAAGGGCGACAUGAAGGAGAAUAGCUUGGGUGGCUCCUUCAUUGGCUUGCGAAACAAAAUUCCAAUUCCUAGAAGUGUCAAUCAGUUUUAAU
.((((..((((.(.(((((((((....((....))..)))))))))).))))(.(((......))))..))))(((((.((.....)).))))).. ( -24.60)
>consensus
CUGAAAACGGCGACAUGAAGGAGAACAGCUUCGGUGGCUCCUUCAUUGGCUUGCGAAACAAAAUUCCGAUUCCUAGAAUUGUUA____GU_UUAA_
........(....)(((((((((....((....))..))))))))).................................................. (-14.09 = -14.07 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:56 2006