Locus 6375

Sequence ID 3R_DroMel_CAF1
Location 16,723,476 – 16,723,567
Length 91
Max. P 0.679823
window10391

overview

Window 1

Location 16,723,476 – 16,723,567
Length 91
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 88.38
Mean single sequence MFE -29.50
Consensus MFE -23.99
Energy contribution -24.68
Covariance contribution 0.70
Combinations/Pair 1.04
Mean z-score -2.13
Structure conservation index 0.81
SVM decision value 0.30
SVM RNA-class probability 0.679823
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16723476 91 + 27905053
UAUUUG-----------GGGCAAAGUUCGCUGCCAUGUCAUAGCAAAUUAUGGCACAUGGCAUACUUUAAGGCGUCGCACAUACUUUGUGCCUCGGCAUGCC
......-----------.((((((((....(((((((((((((....))))))))..))))).)))))..(.((..(((((.....)))))..)).)..))) ( -31.00)
>DroSec_CAF1 17657 91 + 1
CAUUUG-----------GGGCAAAGUUCGCUGCCAUGUCAUAGCAAAUUAUGGCACAUGGCAUACUUUAAGGCGUCGCACAUACUUUGUGCCUCGGCAUGCC
......-----------.((((((((....(((((((((((((....))))))))..))))).)))))..(.((..(((((.....)))))..)).)..))) ( -31.00)
>DroSim_CAF1 17555 91 + 1
CAUUUG-----------GGGCAAAGUUCGCUGCCAUGUCAUAGCAAAUUAUGGCACAUGGCAUACUUUAAGGCGUCGCACAUACUUUGUGCCUCGGCAUGCC
......-----------.((((((((....(((((((((((((....))))))))..))))).)))))..(.((..(((((.....)))))..)).)..))) ( -31.00)
>DroEre_CAF1 18019 91 + 1
UUUUCG-----------GGGCAAAGUUCACCGCCAUGUCAUCGCAAAUUAUGGCACAUGGCAUACUUUAAGGCGUCGCACAUACUUUGUGCCACGGCAUGCC
......-----------.((((.........(((((((....((........))))))))).........(.(((.(((((.....))))).))).).)))) ( -28.90)
>DroYak_CAF1 1332 91 + 1
UUUUCG-----------GGACAAAGUUCGUCGCCAUGUCAUAGCAAAUUAUGGCACAUGGCAUACUUCAGGGCGUCGCACAUACUUUGUGCCACGGCAUGCC
.....(-----------(.(((((((.((.((((.((((((((....))))))))..(((......))).)))).)).....))))))).))..((....)) ( -27.40)
>DroAna_CAF1 1360 102 + 1
UUUUGGAACUUUCACCCGAGCAAAGUUCACAGCGAUGUCACAGCAAAUUAUGGCACAUGGCAUACUUUAAGGCGUCGCACAUAAUUUGUGCUUUGGCAUGCC
...((((((((((......).))))))).))((.((((((..((((((((((((..(((.(.........).))).)).))))))))))....)))))))). ( -27.70)
>consensus
UAUUUG___________GGGCAAAGUUCGCUGCCAUGUCAUAGCAAAUUAUGGCACAUGGCAUACUUUAAGGCGUCGCACAUACUUUGUGCCUCGGCAUGCC
..................((((.........((((((((((((....))))))))..)))).........(.((..(((((.....)))))..)).).)))) (-23.99 = -24.68 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:55 2006