Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,721,177 – 16,721,280 |
Length | 103 |
Max. P | 0.619164 |
Location | 16,721,177 – 16,721,280 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 60.64 |
Mean single sequence MFE | -34.06 |
Consensus MFE | -10.44 |
Energy contribution | -14.12 |
Covariance contribution | 3.69 |
Combinations/Pair | 1.22 |
Mean z-score | -3.34 |
Structure conservation index | 0.31 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619164 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16721177 103 + 27905053 ------CGGCCAAGUGUUGCCAGGCAAAUCCGGUGGCA-UUUCUUAGAA-UCGGAAACGAUUU-AAGAGUUAUGGCAAAACGGGCGUAUCUUAUGACAGCCGUUGUUUGGUU ------..(((((((((..((.((.....))))..)))-))(((((((.-(((....))))))-))))....)))).((((((((...((....))..)))..))))).... ( -34.20) >DroPse_CAF1 38554 102 + 1 UUAAUAUCGCCACAUUUU---UGGCUCAUUUAUUCGCAGCUUUCCAGCUUUUGGAAUCAUUUUGGAGAGCUGC-------UUUGGGUGUCUUGUGACAGCCUUUGUAAGAUA ....((((((((......---))))..........((((((((((((....((....))..))))))))))))-------...((.((((....)))).)).......)))) ( -34.10) >DroYak_CAF1 49480 102 + 1 ------CAAGCCAAGGCUGCCA-GCAAAUCCGGUGCCA-UUGCUUUGAA-UCGGAAACGAUUU-AAGAGUUAUGGCAAAAAGGGCGUAUCUUAUGACAGCCGUUGUUUGGUU ------(((((...(((((.((-.....(((..(((((-(.((((((((-(((....))))))-.))))).))))))....))).........)).)))))...)))))... ( -39.14) >DroPer_CAF1 37858 102 + 1 UUAAUAUGGCCAAAUUUU---UGGCUGAUUUAUUCGCAGCUUUCCAGAAUUCGGAAUCAUUUUGAAGAGCUGC-------UUUGCUUGUCUUGUGACGGCCUUUGUAAGAUA (((....((((.......---.(((.((.....))((((((((.((((((........)))))).))))))))-------...))).(((....)))))))....))).... ( -28.80) >consensus ______CGGCCAAAUGUU___AGGCAAAUCCAGUCGCA_CUUCCCAGAA_UCGGAAACAAUUU_AAGAGCUAC_______UGGGCGUAUCUUAUGACAGCCGUUGUAAGAUA ......................(((..........(((((((((((((..(((....)))))))))))))))).............((((....)))))))........... (-10.44 = -14.12 + 3.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:54 2006