Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,714,163 – 16,714,261 |
Length | 98 |
Max. P | 0.944480 |
Location | 16,714,163 – 16,714,261 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 69.96 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -7.44 |
Energy contribution | -6.92 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.26 |
Mean z-score | -2.17 |
Structure conservation index | 0.25 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944480 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16714163 98 + 27905053 CG--CUCUGGUCCAUAAUG-CUAUCUCUUU--UCGGGGACA-----------------UCCUGUGGAGAGGGCGUUUAAUUUGUUUCAGAUGACUUUUGAUUAUUUUAGCAAUUGGAUUA ..--...(((((((...((-(((((((((.--.((((....-----------------.))))..))))))..............(((((.....)))))......)))))..))))))) ( -26.40) >DroPse_CAF1 31001 117 + 1 CG--CUCCGUUCGCUAUGG-UUAUCCCGGUUAUCUGGUAUGGCCUGCAGGGCAUUCCGGCCUGCGGCAUGGGCGUUUAAUUUAUUUCAGAUGACUUUUGAUUAUUUUAGCAAUUGGAUUU ..--.((((...((((..(-(.(((..((((((((((.(((.(((((.((((......))))...))).)).)))..........))))))))))...))).))..))))...))))... ( -37.30) >DroYak_CAF1 41959 100 + 1 AGGAGUCUAGUCCAUAAUG-CUAUCUCUUU--UCUGGGGUA-----------------GCCUGUGGAGAGGGCGUUUAAUUUGUUUCAGAUGACUUUUGAUUAUUUUUGCAAUCGGAUUU ..((((((..((((((..(-(((((((...--...))))))-----------------)).))))))((..(((..(((((.(((......)))....)))))....)))..)))))))) ( -28.40) >DroAna_CAF1 26824 90 + 1 ------UUGCCCCAUUAUAUCUAUCUCUGU--UCAU----------------------GCCUGCGGCAUGGGCGUUUAAUUUGUUUUGGACGACUUUUGAUUAUUUUAGCAAUUGAAUUU ------((((........(((.......((--((((----------------------(((...)))))))))((((((......)))))).......))).......))))........ ( -19.26) >DroPer_CAF1 30111 117 + 1 CG--CUCCGUUCGCUAUGG-UUAUCCCGGUUAUCUGGUAUGGCCUGCAGGGCAUUCUGGCCUGCGGCAUGGGCGUUUAAUUUAUUUCAGAUGACUUUUGAUUAUUUUAGCAAUUGGAUUU ..--.((((...((((..(-(.(((..((((((((((.(((.(((((.((((......))))...))).)).)))..........))))))))))...))).))..))))...))))... ( -37.30) >consensus CG__CUCUGGUCCAUAAUG_CUAUCUCUGU__UCUGGGAUA_________________GCCUGCGGCAUGGGCGUUUAAUUUGUUUCAGAUGACUUUUGAUUAUUUUAGCAAUUGGAUUU .....(((..................................................((((.......))))(((.((..((..(((((.....))))).))..)))))....)))... ( -7.44 = -6.92 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:47 2006