Locus 637

Sequence ID 3R_DroMel_CAF1
Location 2,351,639 – 2,351,737
Length 98
Max. P 0.874998
window1011

overview

Window 1

Location 2,351,639 – 2,351,737
Length 98
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 81.09
Mean single sequence MFE -34.22
Consensus MFE -23.92
Energy contribution -23.88
Covariance contribution -0.04
Combinations/Pair 1.21
Mean z-score -2.22
Structure conservation index 0.70
SVM decision value 0.89
SVM RNA-class probability 0.874998
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2351639 98 - 27905053
AGCAGCCAACGCUGCGAAGCCGCAUAAUUCUCGAAAGGGGGACUAAUGAGGGCUUAUUCAACGGGGGGCGUGGCAGGCAAAGG-AAGUGCCUGCAGGCU------
.(((((....)))))..((((.(((..((((((...((....))..((((......)))).))))))..)))(((((((....-...))))))).))))------ ( -38.70)
>DroSec_CAF1 55425 97 - 1
AGCAGCCAACGCUGCGAAGCCGCAUAAUUCUCGAAAGGGGGACUAAUGAGGGCUUAUUCAACGG-GGGCGUGGCAGGCGAAGG-AAGUGCCUGCGGGCU------
(((.(((..((.((..(((((.(((..(((((....)))))....)))..)))))...)).)).-.)))...(((((((....-...)))))))..)))------ ( -38.50)
>DroSim_CAF1 55807 97 - 1
AGCAGCCAACGCUGCGAAGCCGCAUAAUUCUCGAAAGGGGGACUAAUGAGGGCUUAUUCAACGG-GGGCGUGGCAGGCGAAGG-AAGUGCCUGCGGGCU------
(((.(((..((.((..(((((.(((..(((((....)))))....)))..)))))...)).)).-.)))...(((((((....-...)))))))..)))------ ( -38.50)
>DroEre_CAF1 58072 98 - 1
AGCAGCCAACGCUGCGAAGCCGCAUAAUUCUCGAAAGGGGAACUAAUGAGGGCUCAUUCAACGAGGGGAGUGGCAGGCGAAGG-AAAUGCUGGGAGGCU------
((((.((..((((((..((((.(((..(((((....)))))....)))..))))(((((........)))))))).)))..))-...))))........------ ( -32.50)
>DroYak_CAF1 51748 97 - 1
AGCAGCCAAGGCUGCGAAGCCGCAUAAUU-UCGGAAGGGGAACUAAUGAGGGCUCAUUCAAGGAGGGUGGUGGCAGGCGAAGG-AAAUGCUUGGAUGCU------
((((.(((((.((((...(((((....((-((.(((.(((..((....))..))).)))..)))).))))).)))).(....)-.....))))).))))------ ( -32.30)
>DroAna_CAF1 54106 97 - 1
A---GCCAGAGC----AUGCCGCAAAAUUUUCAAAAAGAGAACUAAUGAGUGCUGAUUCAGUGU-GGGUGUGGAAAGCGGAGGGAAGUCCUUCUAAGCAAAAAAU
.---((....((----...(((((...(((((.....)))))(((.(((((....)))))...)-)).)))))...))((((((....))))))..))....... ( -24.80)
>consensus
AGCAGCCAACGCUGCGAAGCCGCAUAAUUCUCGAAAGGGGAACUAAUGAGGGCUUAUUCAACGG_GGGCGUGGCAGGCGAAGG_AAGUGCCUGCAGGCU______
.(((((....)))))...(((((....(((((....))))).....((((......)))).........)))))(((((........)))))............. (-23.92 = -23.88 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:03 2006