| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,711,920 – 16,712,017 |
| Length | 97 |
| Max. P | 0.929058 |
| Location | 16,711,920 – 16,712,017 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.51 |
| Mean single sequence MFE | -28.52 |
| Consensus MFE | -14.48 |
| Energy contribution | -13.84 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16711920 97 + 27905053 UUUUCAUGCCAAUUGGCAGUUAGGCUACCCC-----------GCCCACAGCGGUCAUGCCCCUUU-UUGGG-CCCUCAAAGCUAAUUUGCUGGCUGCUAACACAACAGUG---------- ......((((....))))(((((((......-----------)))....((((((..((((....-..)))-)......(((......))))))))))))).........---------- ( -29.60) >DroPse_CAF1 29101 98 + 1 UUUUCAUGCCAAUUGGCAGUUAGGGACCU-C-----------CCUCGCCGCUGCCACGCCCCUUCUUUGGGACUCUCAAAGCUAAUUUGCUUACUGUUAACGCAACUGCG---------- .......((....(((((((.((((....-)-----------)))....))))))).(((((......))).......((((......)))).........))....)).---------- ( -27.50) >DroYak_CAF1 39480 94 + 1 UUUUCAUGCCAAUUGGCAGUUAGGCUACUCC-----------ACCCACAGCGGUCAUGCCCCUUU-UUGGG-AUCUCAAAGCUAAUUUGCU---UGCUAACACAACAGCG---------- ......((((....))))(((((........-----------.((((.((.((.....)).))..-.))))-......((((......)))---).))))).........---------- ( -22.10) >DroAna_CAF1 24863 116 + 1 UUUUCAUGCCAAUUGGCAGUUAGGCAGCUCAGCUCUCCUUCGACCCCUCGCGGUCACGCCUCUGUCUCGAG-UCCUCAAAGCUAAUUUGCU---UUGUGGCACUGCUACGGCUCUUCUCU .......(((....(((((..(((((((...))).......((((......))))..)))))))))...((-(((.((((((......)))---))).)).))).....)))........ ( -35.80) >DroPer_CAF1 28181 98 + 1 UUUUCAUGCCAAUUGGCAGUUAGGGACCU-C-----------CCUCGCCGCUGCCCCGCCUCUUCUUUGGGACUCUCAAAGCUAAUUUGCUUACUGGUAACGCAACUGCG---------- ......(((((...((((((.((((....-)-----------)))....))))))..((.....(((((((...))))))).......))....))))).(((....)))---------- ( -27.60) >consensus UUUUCAUGCCAAUUGGCAGUUAGGCAACUCC___________ACCCACCGCGGUCACGCCCCUUU_UUGGG_CUCUCAAAGCUAAUUUGCU__CUGCUAACACAACUGCG__________ .......((.(((((((..(.(((.........................((......))(((......)))..))).)..))))))).)).............................. (-14.48 = -13.84 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:46 2006