Locus 6367

Sequence ID 3R_DroMel_CAF1
Location 16,697,068 – 16,697,188
Length 120
Max. P 0.579143
window10379

overview

Window 9

Location 16,697,068 – 16,697,188
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.00
Mean single sequence MFE -37.86
Consensus MFE -26.98
Energy contribution -28.02
Covariance contribution 1.04
Combinations/Pair 1.18
Mean z-score -1.76
Structure conservation index 0.71
SVM decision value 0.09
SVM RNA-class probability 0.579143
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16697068 120 + 27905053
AUCCCAGUUUGACCCCUGAGGAACGGGAGAGUAUCGAUAAGUUCGUCAACGAGCAUACGGAUGCCAUUAUAAUCGAUGGAGUUCCGAUUCAGGGAGGUCGAAAGGCGAGGAUCGUUGGAA
.(((...((((((((((...((((((((...(((((((..(((((....)))))....((...))......)))))))...))))).))).))).))))))).((((.....))))))). ( -39.40)
>DroSec_CAF1 16566 120 + 1
AUCCCACUUUGAGCCUUGAGGAUCGGGAGAAUAUCGAUAAGUUCGUCAACGAGCAUACGGAUGCCAUUGUAAUCGAUGGAGUUCCGAUUCAGGGAGGUCGAAAGGCGAAGAUCAUUGGAA
...(((...(((.(((((((.(((((.......)))))..(((((....)))))...((((..((((((....))))))...)))).)))))))..(((....))).....))).))).. ( -39.90)
>DroSim_CAF1 16412 120 + 1
AUCCCAGUUUAAGCCUUGAGGAUCGGGAGAAUAUCGAUAAGUUCGUCAACGAGCAUACGGAUGCCAUUGUAAUCGAUGGAGUUCCGAUUCAGGGAGGUCGAAAGGCGAAGAUCAUUGGAA
...(((((.....(((((((.(((((.......)))))..(((((....)))))...((((..((((((....))))))...)))).)))))))..(((....))).......))))).. ( -40.10)
>DroEre_CAF1 17769 120 + 1
AUCCCAGUUUGACCCCUGAGGAACGGGAGAGUAUCGAUAACUUCGUCAAUGAGCAUACGGAUGAAGUUCUAGUCGAUGGAGUUCCAAGUCAGGGAGGCCGGAAGACCAAGUUCGCUAAAA
.....(((..((((((((((((((.......((((((((((((((((............)))))))))...)))))))..)))))...)))))).((.(....).))..))).))).... ( -35.80)
>DroYak_CAF1 24260 120 + 1
AUCCCAGUUUGACCCUUGAGGAUCGGGAGAGUAUCGAUAAGUUCGUCAAUGAACACACGGAUGCGAUUCUAAUCGAUGGAGUUCCGAGUCAGGGAGGCCGUAAGACCAAGUACGUUGGAA
.......((..((((((((...((((((...(((((((.((.((((...((......))...))))..)).)))))))...)))))).)))))).((.(....).))......))..)). ( -34.10)
>consensus
AUCCCAGUUUGACCCUUGAGGAUCGGGAGAGUAUCGAUAAGUUCGUCAACGAGCAUACGGAUGCCAUUCUAAUCGAUGGAGUUCCGAUUCAGGGAGGUCGAAAGGCGAAGAUCGUUGGAA
...(((((.....(((((((...(((((...(((((((..(((((....))))).......((......)))))))))...))))).)))))))..(((....))).......))))).. (-26.98 = -28.02 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:43 2006