Locus 6366

Sequence ID 3R_DroMel_CAF1
Location 16,695,215 – 16,695,323
Length 108
Max. P 0.696122
window10378

overview

Window 8

Location 16,695,215 – 16,695,323
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.68
Mean single sequence MFE -31.62
Consensus MFE -21.95
Energy contribution -23.02
Covariance contribution 1.07
Combinations/Pair 1.17
Mean z-score -2.01
Structure conservation index 0.69
SVM decision value 0.34
SVM RNA-class probability 0.696122
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16695215 108 - 27905053
UUUAUUACCGCUGGAAUGGCUUACAAAGUGGAUUUGGAGGCGCCUAUAAAAGCG---GGCCAAAGAAAAAGUAUA-AGCCCUAAACGAGGCGCCUUCGAACUGA-------GGAUUUGU-
.......(((((....((.....)).))))).(((((((((((((........(---(((...............-.))))......)))))))))))))....-------........- ( -33.43)
>DroSec_CAF1 14636 108 - 1
UUUAUUACCGCUGGAAUGGCUUACAAAGUGGAUUUGGAGGCGCCUAUAAAAGCG---GGCCAAAGAAAAAGUAUA-AGCCCUAAACGAGGCGCCUUCGAACUGA-------GGAUUUGA-
.......(((((....((.....)).))))).(((((((((((((........(---(((...............-.))))......)))))))))))))....-------........- ( -33.43)
>DroSim_CAF1 14524 108 - 1
UUUAUUACCGCUGGAAUGGCUUACAAAGUGGAUUUGGAGGCGCCUAUAAAAGCG---GGCCAAAGAAAAAGUAUA-AGCCCUAAACGAGGCGCCUUCGAACUGA-------GGAUUUGA-
.......(((((....((.....)).))))).(((((((((((((........(---(((...............-.))))......)))))))))))))....-------........- ( -33.43)
>DroEre_CAF1 15683 108 - 1
UUUAUUACCACUGGAAUGGCUUACAAAGUGGAUUUGGAGGCGCCUAUAAAAGCG---GGCCAAAGAAAAAGUAUA-AGCCCUAAACGAGGCGCCGUCGAACUGA-------GGACUUUA-
.......(((((....((.....)).))))).((((..(((((((........(---(((...............-.))))......)))))))..))))....-------........- ( -30.23)
>DroYak_CAF1 22342 116 - 1
UUUAUUACCACUGGAAUGGCUUACAAAGUGGAUUUGGAGGCGCCUAUAAAAGCG---GGCCAAAGAAAAAGCAUAAAGCCCUAAGCGAGGCGCCUUCGAACUGAGGACUGAGGACUUUA-
.......(((((....((.....)).))))).(((((((((((((......(((---(((.................))))...)).)))))))))))))..(((..(...)..)))..- ( -34.33)
>DroAna_CAF1 13214 88 - 1
UUUAUUACCAAUGGAAUGGCUUACAAAGUGGAUUUGGAGGCGCCAAUAAAGCCUCCUGG-CAAA------------------------GCCGCCCCAGGUCGCA-------GGACUUGUA
.................(((...............((((((.........)))))).((-(...------------------------)))))).((((((...-------.)))))).. ( -24.90)
>consensus
UUUAUUACCACUGGAAUGGCUUACAAAGUGGAUUUGGAGGCGCCUAUAAAAGCG___GGCCAAAGAAAAAGUAUA_AGCCCUAAACGAGGCGCCUUCGAACUGA_______GGACUUGA_
.......(((((....((.....)).))))).(((((((((((((......((.....((..........)).....))........))))))))))))).................... (-21.95 = -23.02 +   1.07)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:42 2006