Locus 6365

Sequence ID 3R_DroMel_CAF1
Location 16,694,726 – 16,694,822
Length 96
Max. P 0.943160
window10377

overview

Window 7

Location 16,694,726 – 16,694,822
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 95.83
Mean single sequence MFE -22.17
Consensus MFE -21.84
Energy contribution -22.07
Covariance contribution 0.23
Combinations/Pair 1.06
Mean z-score -2.14
Structure conservation index 0.99
SVM decision value 1.33
SVM RNA-class probability 0.943160
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16694726 96 - 27905053
UGAUAUUCCACGCGUUUACUGCACUUUGAUUAGAGAAAAUUAAUUUAUUUGCAUUUCAUCAAAGUUUUUGCGCAGCGAAUAACGUUUAAUUAAGCG
...(((((...((((.......((((((((.(((..((((......))))...))).))))))))....))))...))))).(((((....))))) ( -18.30)
>DroSec_CAF1 14148 96 - 1
UGAUAUUCCAAGCGUUUACUGCACUUUGAUGAGAGAAAAUUAAAUUAAUUGCAUUUCGUCAAAGUUUUUGCGCAGCGAAUAACGUUUAAUUAAACG
...(((((...((((.......((((((((((((...(((((...)))))...))))))))))))....))))...))))).(((((....))))) ( -24.10)
>DroSim_CAF1 14034 96 - 1
UGAUAUUCCAAGCGUUUACUGCACUUUGAUGAGAGAAAAUUAAAUUAAUUGCAUUUCGUCAAAGUUUUUGCGCAGCGAAUAACGUUUAAUUAAACG
...(((((...((((.......((((((((((((...(((((...)))))...))))))))))))....))))...))))).(((((....))))) ( -24.10)
>consensus
UGAUAUUCCAAGCGUUUACUGCACUUUGAUGAGAGAAAAUUAAAUUAAUUGCAUUUCGUCAAAGUUUUUGCGCAGCGAAUAACGUUUAAUUAAACG
...(((((...((((.......((((((((((((...(((((...)))))...))))))))))))....))))...))))).(((((....))))) (-21.84 = -22.07 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:41 2006