| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,679,585 – 16,679,680 |
| Length | 95 |
| Max. P | 0.704190 |
| Location | 16,679,585 – 16,679,680 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 76.71 |
| Mean single sequence MFE | -22.12 |
| Consensus MFE | -10.82 |
| Energy contribution | -10.65 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704190 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16679585 95 + 27905053 ------------GUGUAC------AUACCUUCAUGUACUCCAGAAUCUCGGCCUGCUUUUCCUGCUUGGUAAAGCGGAUGGCCUCCCAUUCCUCAUCGGAGAUCUCACCAUAU ------------..((((------((......))))))....(((((((.(...(((((.((.....)).)))))((((((....)))))).....).))))).))....... ( -24.80) >DroPse_CAF1 2487 92 + 1 --------------GCA-------UUACCUUCAUGUACUUUAGAAUCUCAUACUGCUUUUCCUGCUUGGUGAAGCGUAUGGACUCCCACUCCUCAUCGGAGAUCUCACCGUAU --------------...-------..........((((....((.((.(((((.(((((.((.....)).)))))))))))).))...((((.....))))........)))) ( -21.90) >DroGri_CAF1 3048 99 + 1 --------AAUUCCCUCC------UUACCUUCAUAUAUUCGAGCAUUUCGUCCUGCUUCUCUUGUUUGGUAAACCUUAUUGACUCCCAUUCCUCAUCGGAUAUUUCGCCGUAA --------..........------.(((......(((((((((((........)))...((..((..((....))..)).)).............))))))))......))). ( -11.20) >DroEre_CAF1 4141 106 + 1 GAGAUAAG-UUGAAAUAC------AUACCUUCAUGUACUCCAGAAUCUCGGCCUGCUUUUCCUGCUUGGUAAAGCGAAUGGCCUCCCAUUCUUCAUCGGAGAUCUCCCCAUAU (((((...-......(((------((......)))))(((((((((...((((((((((.((.....)).))))))...))))....))))).....)))))))))....... ( -28.30) >DroYak_CAF1 3206 105 + 1 -------G-UUGAUAUACAUUGAUAUACCUUCAUAUACUCCAGAAUUUCCGCCUGCUUUUCCUGCUUGGUGAAGCGAAUGGCCUCCCAUUCCUCAUCGGAGAUCUCACCGUAU -------.-.....((((..(((.......))).........(((((((((...(((((.((.....)).)))))((((((....)))))).....))))))).))...)))) ( -24.10) >DroPer_CAF1 2477 92 + 1 --------------GCA-------UUACCUUCAUGUACAUUAGAAUCUCAUACUGCUUUUCCUGCUUGGUGAAGCGUAUGGACUCCCACUCCUCAUCGGAGAUCUCACCGUAU --------------...-------..........((((....((.((.(((((.(((((.((.....)).)))))))))))).))...((((.....))))........)))) ( -22.40) >consensus ______________GUAC______AUACCUUCAUGUACUCCAGAAUCUCGGCCUGCUUUUCCUGCUUGGUAAAGCGUAUGGACUCCCAUUCCUCAUCGGAGAUCUCACCGUAU ......................................................(((((.((.....)).)))))..((((.......((((.....))))......)))).. (-10.82 = -10.65 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:40 2006