| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,679,005 – 16,679,105 |
| Length | 100 |
| Max. P | 0.621429 |
| Location | 16,679,005 – 16,679,105 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.87 |
| Mean single sequence MFE | -26.27 |
| Consensus MFE | -16.23 |
| Energy contribution | -16.31 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16679005 100 - 27905053 AACCAUGGACAUUCUGACCGUGCACGUGAGUUUUUGAGCCAGGAAUAUA--------GU--UCUUAU-UAUUGGUUCAAAUCGCUCGCAGAAUCCACCCUGGCAAAUCCUU ..(((.((..((((((..((.((((....)).((((((((((.((((..--------..--...)))-).))))))))))..)).))))))))...)).)))......... ( -29.00) >DroVir_CAF1 1993 109 - 1 CACCAUGGAUAUUGUCACGGUGCAUGUGAGUCAUUGAACCAGGAAUAUAUGUAUGUAAU--UCUUAUAUAUUGGUUCAAAUUUCUCGCAGAAUCCGCCCUGGCAAAUAUUG .......((((((((((.((((..((((((...(((((((((..(((((..........--...))))).)))))))))....)))))).....)))).)))).)))))). ( -32.42) >DroGri_CAF1 2364 101 - 1 CACCAUGGAUAUUGUCACUGAGCAUGUGAGUCUUUGAGCCAGGAAUAUA--------AU--UGUUAUAUAUUGGUUCAAACAACUCGUAGAAUCCGCCCUGGCAAAUUCUC ......((((.(((((((.((...(((((((.((((((((((..(((((--------..--...))))).))))))))))..)))))))...)).)...)))))))))).. ( -24.90) >DroWil_CAF1 154 103 - 1 CACCAUGGAUAUUCUGACCGUACAUGUGAGUCUUUGAAUCAGGAAUAUA--------UUAUCAUUAUAUAUUGGUUCGAAAUGCUCGUAGAAUCCACCUUGGCAAAUCCUG ..(((.((..((((((..........(((((.((((((((((..(((((--------.......))))).))))))))))..)))))))))))...)).)))......... ( -21.80) >DroMoj_CAF1 2006 104 - 1 CACCAUGGACAUUGUGACAGUGCAUGUGAGUCUUUGAGCCAGGAAUAUAUGUUC----A--UCUUAU-UAUUGGUUCAAAUCUCUCGUAGAAUCCUCCCUGGCAAAUCUUA ..(((.((((((((...))))).(((.(((..((((((((((.((((.......----.--...)))-).)))))))))).))).))).......))).)))......... ( -24.90) >DroAna_CAF1 1966 101 - 1 CACAAUGGAUGUGGUGACGGUGCAUGUGAGUCUUUGAACCAGGAAUAUA--------AU--UUGUAUAUAUUGGUUCAAAUCGCUCGUAGAAUCCUCCCUGGCAAAUUCUU .........(((((.((.((....(((((((.((((((((((..(((((--------..--...))))).))))))))))..)))))))....))))))..)))....... ( -24.60) >consensus CACCAUGGAUAUUGUGACCGUGCAUGUGAGUCUUUGAACCAGGAAUAUA________AU__UCUUAUAUAUUGGUUCAAAUCGCUCGUAGAAUCCACCCUGGCAAAUCCUG ..(((.((................((((((..((((((((((..(((((...............))))).))))))))))...))))))(....).)).)))......... (-16.23 = -16.31 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:39 2006