| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,677,306 – 16,677,411 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 16,677,306 – 16,677,411 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 90.13 |
| Mean single sequence MFE | -26.13 |
| Consensus MFE | -23.18 |
| Energy contribution | -23.51 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.89 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16677306 105 + 27905053 AAGCCUUAAAAUGCCACACAUUACGCAGCUGGUGCAAUAGUUUUGCUAAAGUUACCUGCUUAAAUUCGACCACCGCAUAUGGCGGGAAACCAGUUUACUAGUAGG ..((.....((((.....))))..))((((...((((.....))))...)))).((((((((((((.(....((((.....))))....).))))))..)))))) ( -22.60) >DroSec_CAF1 708 94 + 1 AAGCCUUA--AUGCCAC---------AGGUGGUGCAAUAGUUUUGCUGAAGUUACCUGCUUAAAUUAGACCACCGCAUAUGGCGGGAAACCAGUUUACUAGUAAG ..(((...--((((...---------.((((((((((.....))))..((((.....)))).......))))))))))..)))((....)).............. ( -27.90) >DroSim_CAF1 708 94 + 1 AAGCCUUA--AUGCCAC---------AGGUGGUGCAAUAGUUUUGCUGAAGUUACCUGCUUAAAUUAGACCACCGCAUAUGGCGGGAAACCAGUUUACUAGUAAG ..(((...--((((...---------.((((((((((.....))))..((((.....)))).......))))))))))..)))((....)).............. ( -27.90) >consensus AAGCCUUA__AUGCCAC_________AGGUGGUGCAAUAGUUUUGCUGAAGUUACCUGCUUAAAUUAGACCACCGCAUAUGGCGGGAAACCAGUUUACUAGUAAG ..(((.....((((.............((((((((((.....))))..((((.....)))).......))))))))))..)))((....)).............. (-23.18 = -23.51 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:38 2006