Locus 6361

Sequence ID 3R_DroMel_CAF1
Location 16,673,250 – 16,673,358
Length 108
Max. P 0.677525
window10373

overview

Window 3

Location 16,673,250 – 16,673,358
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.37
Mean single sequence MFE -43.03
Consensus MFE -27.98
Energy contribution -27.32
Covariance contribution -0.66
Combinations/Pair 1.32
Mean z-score -1.78
Structure conservation index 0.65
SVM decision value 0.30
SVM RNA-class probability 0.677525
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16673250 108 - 27905053
UC------------AUUUCCGGUUCCGGACUGGAGGCGUUCGAUGAGAAGGUGGAGUCGCAGCUCUCGUCCUUUUCGCGCUUCUCCCGUCGCUCGCGAGCCCUUCGAUUCUGGAACCAGA
..------------......(((((((((.((((((.(((((..(((((((((((((....)))).)).)))))))((((.......).)))...)))))))))))..)))))))))... ( -45.90)
>DroVir_CAF1 17173 120 - 1
AUAUAUCCGACUCCGUGUCCGGCUCUGGACUGGAUGCAUUUGAUGAGAAGGUGGAGUCGCAGCUCUCGUCCUUCUCCCGUUUCUCACGUCUUUCGCGGGCACGACGAUUCUGGAACCAGA
.....(((((.((((((((((.(...((((((((.((.......(((((((((((((....)))).)).)))))))..)).)).)).))))...)))))))))..)).)).)))...... ( -38.50)
>DroPse_CAF1 25352 108 - 1
GC------------AUGUCCGGUUCCGGACUGGAGGCAUUCGAAGAGAAGGUGGAGUCGCAGCUCUCAUCCUUGUCGCGUUUUUCGCGUCGUUCGCGGGCGCGCCGGUUCUGGAACCAGA
..------------......(((((((((((((...........((.((((((((((....)))).)).)))).))((((...(((((.....))))))))).)))).)))))))))... ( -46.20)
>DroWil_CAF1 17518 108 - 1
UC------------AUUUCCGGUUCCGGACUGGAUGCAUUGGAUGAGAAUGUGGAGUCGCAGCUUUCAUCCUUUUCCCGUUUCUCUCGACGUUCGCGAGCACGGCGAUUUUGGAACCAGA
..------------......(((((((((...........((((((((.((((....))))..))))))))...((((((..(((.((.....)).))).)))).)).)))))))))... ( -37.30)
>DroAna_CAF1 24439 108 - 1
UA------------UUUUCCGGUUCCGGACUGGAGGCGUUCGAGGAGAAGGUGGAGUCACAGCUCUCGUCCUUUUCCCGCUUCUCUCGCCGCUCUCGGGCUCUUCUGUUUUGGAACCAGA
..------------......(((((((((..(((((.((((((((((((((((((((....)))).)).)))))))).((.......)).....)))))).)))))..)))))))))... ( -43.80)
>DroPer_CAF1 25483 108 - 1
GC------------AUGUCCGGUUCCGGACUGGAGGCAUUCGAAGAGAAGGUGGAGUCGCAGCUCUCAUCUUUGUCGCGUUUUUCGCGUCGUUCGCGGGCGCGCCGGUUCUGGAACCAGA
..------------......(((((((((((((........((...(((((((((((....)))).))))))).))((((...(((((.....))))))))).)))).)))))))))... ( -46.50)
>consensus
UC____________AUGUCCGGUUCCGGACUGGAGGCAUUCGAUGAGAAGGUGGAGUCGCAGCUCUCAUCCUUUUCCCGUUUCUCGCGUCGUUCGCGGGCACGCCGAUUCUGGAACCAGA
....................(((((((((..((((((.......(((((((((((((....)))).)).)))))))..))))))......(((....)))........)))))))))... (-27.98 = -27.32 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:37 2006