Locus 6359

Sequence ID	3R_DroMel_CAF1
Location	16,663,090 – 16,663,183
Length	93
Max. P	0.650791

overview

Window 0

Location	16,663,090 – 16,663,183
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	91.29
Mean single sequence MFE	-22.74
Consensus MFE	-16.56
Energy contribution	-16.68
Covariance contribution	0.12
Combinations/Pair	1.17
Mean z-score	-2.00
Structure conservation index	0.73
SVM decision value	0.24
SVM RNA-class probability	0.650791
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16663090 93 + 27905053
AUUCUUCGGGCAUUUUAUAUUUGCUAUACCUAUAGAUAUGGCUACAUAUGUAUGUUUGUAUAUAUCUUGCGGCUGCGGCUGAUUAGAUAAACC
......(((((((..(((((..((((((.(....).))))))...))))).)))))))....(((((..((((....))))...))))).... ( -21.60)
>DroSec_CAF1 6336 93 + 1
AUUCUUCGGGCAUAUUAUAUUUGCUAUACCUAUAGCUAUGGCUACAUAUGUAUGUUUGUAUAUAUCUUGCGGCUGCGGCUGAUUAGAUAAACC
......(((((((((.((((..((((((.(....).))))))...)))))))))))))....(((((..((((....))))...))))).... ( -23.20)
>DroSim_CAF1 6343 93 + 1
AUUCUUCGGGCAUAUUAUAUUUGCUAUACCUAUAGCUAUGGCUACAUAUGUAUGUUUGUAUAUAUCUUGCGGCUGCGGCUGAUUAGAUAAACC
......(((((((((.((((..((((((.(....).))))))...)))))))))))))....(((((..((((....))))...))))).... ( -23.20)
>DroEre_CAF1 5670 89 + 1
GUUCUUCGGGCAUAUUAUAGUUGCCCUACCUAUAGCUUUACCUACAUAUGUAU----GUAUAUAUCUUGCGGCUGCGGCUGAUUAGAUAAACC
.......(((((.........)))))............(((.(((....))).----)))..(((((..((((....))))...))))).... ( -20.10)
>DroYak_CAF1 5934 93 + 1
GUUCUUCGGGCAUAUUAUAUUUGCCAUAGCUAUAGCUAUGGUUACAUAUGUACAUACAUAUAUAUCUUGCGGCUGCGGCUGAUUAGAUAAACC
.......(..(((((.......((((((((....))))))))...)))))..).........(((((..((((....))))...))))).... ( -25.60)
>consensus
AUUCUUCGGGCAUAUUAUAUUUGCUAUACCUAUAGCUAUGGCUACAUAUGUAUGUUUGUAUAUAUCUUGCGGCUGCGGCUGAUUAGAUAAACC
........((((.........))))....((((((((..(((..((.(((((((....)))))))..))..)))..)))))..)))....... (-16.56 = -16.68 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:34 2006