Locus 6357

Sequence ID 3R_DroMel_CAF1
Location 16,660,613 – 16,660,722
Length 109
Max. P 0.825556
window10368

overview

Window 8

Location 16,660,613 – 16,660,722
Length 109
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 90.85
Mean single sequence MFE -25.16
Consensus MFE -20.84
Energy contribution -21.52
Covariance contribution 0.68
Combinations/Pair 1.17
Mean z-score -1.58
Structure conservation index 0.83
SVM decision value 0.70
SVM RNA-class probability 0.825556
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16660613 109 - 27905053
AGACGGGCUCUGAGUAAAUUUAUUGUUUGCCUAAUUUGU-UCAAUUAAGAAAUUCCUUCACAUUGAUGCAACAGGCAGAACUUUAAUUACUGGAGCCUUAUCAACGACCA
.((.(((((((.(((((..(((..((((((((...((((-(((((...(((.....)))..))))).)))).)))))).))..)))))))))))))))..))........ ( -28.80)
>DroSec_CAF1 3884 109 - 1
AGUCGGGCUCUGAGUAAAUUUAUUGUUUGCCCAAUGUGU-UCGAUUAAGAAAUUCCUUCACAUUGAUGCAACAGGCAGAACUUUAAUUACUGGAGUCUUAUCAACGGCCA
.((((((((((.(((((..(((..((((((((((((((.-..((.........))...)))))))........))))).))..)))))))))))))).......)))).. ( -26.11)
>DroSim_CAF1 3868 109 - 1
AGUCGGGCUCUGAGUAAAUUUAUUGUUUGCCCAAUUUGU-UCGAUUAAGAAAUUCCUUCACAUUGAUGCAACAGGCAGAACUUUAAUUACUGGAGCCUUAUCAACGGCCA
.((((((((((.(((((..(((..(((((((....((((-(((((...(((.....)))..))))).))))..))))).))..)))))))))))))).......)))).. ( -27.21)
>DroEre_CAF1 3182 105 - 1
AGU----CUUUAAGUAAAUGUAUUGUUUGCCCAAUUUGUUUCGAUUAGG-AAUUCCUUCACAUUGAUGCAACAGGCAGAACUUUAAUUACUGGAGCCUUAUCAACGACCA
.((----(....(((((.((.....((((((....((((.(((((.(((-....)))....))))).))))..))))))....)).))))).((......))...))).. ( -21.00)
>DroYak_CAF1 3520 106 - 1
AGU----CUCUGAGUAAAUUUCUUGUUUGCCCAAUUUGUUUCGAUUAAGAAAUUCCUUCUCAUUGAUGCAACAGGCAGAAGUUUAAUUAUUGGAGCUUUAUCAACGACCG
((.----(((..(.(((((((((.(((((......((((.(((((..((((.....)))).))))).))))))))))))))))))....)..)))))............. ( -22.70)
>consensus
AGUCGGGCUCUGAGUAAAUUUAUUGUUUGCCCAAUUUGU_UCGAUUAAGAAAUUCCUUCACAUUGAUGCAACAGGCAGAACUUUAAUUACUGGAGCCUUAUCAACGACCA
....(((((((.(((((........((((((....((((.(((((.(((......)))...))))).))))..)))))).......))))))))))))............ (-20.84 = -21.52 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:32 2006