| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,654,325 – 16,654,443 |
| Length | 118 |
| Max. P | 0.958362 |
| Location | 16,654,325 – 16,654,443 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 74.56 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -11.23 |
| Energy contribution | -10.73 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.45 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16654325 118 - 27905053 CCGAUUGCGAUCUCGCCAUUUCACCGUAUCUUAUCAUAGACCCGGACUAUAAGCUAUGUGCAUACAUACAUACACAUGUAUGUAUGUAUAAGCCCUCUCCUUGGCACCGCGUAAACAU ..(.(((((.....((((.....(((..(((......)))..))).......(((.(((((((((((((((....))))))))))))))))))........))))....))))).).. ( -37.80) >DroPse_CAF1 3533 93 - 1 ---AUCGCG-GCUCGGCAUUUCCUCGUAUCUUAUCAUGGCUCAGGAAUACAAAAGUUGUACGAA---------------------UUGUAUGGCCUGUCCGUGGUACUGCGUAAACAU ---..((((-(...((.....))........((((((((..((((.((((((..(.....)...---------------------))))))..)))).)))))))))))))....... ( -25.60) >DroSec_CAF1 4476 102 - 1 CCGAUUGCGAUCUCGCCAUUUUCCUGUAUCUUAUCAUAGACCCGGACUAGAAGCUUUGUACAUACAU----------------AUGUAUAAGCCCUCUCCUUGGCACCGCGUAAACAU ..(.(((((.....((((.....(((..(((......)))..)))...(((.((((.((((((....----------------))))))))))..)))...))))....))))).).. ( -23.00) >DroSim_CAF1 4626 102 - 1 CCGAUUGCGAUCUCGCCAUUUCCCCGUAUCUUAUCAUAGACCCGGACUAUAAGCUAUGUACAUACAU----------------AUGUAUAAGCCCUCUCCUUGGCACCGCGUAAACAU ..(.(((((.....((((.....(((..(((......)))..))).......(((.(((((((....----------------))))))))))........))))....))))).).. ( -24.40) >DroEre_CAF1 3396 90 - 1 CCGGUUGCGAUCUCGCCAUUUUCCCGUAUCUUAUCAUAGACCCGGACUAUAAGCUAC----------------------------ACCUAAGCCCUCUCCUUGGCACCGCGCAAACAU ..(.(((((.....((((.....(((..(((......)))..))).......(((..----------------------------.....)))........))))....))))).).. ( -19.90) >DroYak_CAF1 4621 90 - 1 CCGUGCGCGAUCUCGCAAUUUUCCCGUAUCUUAUCGUAGACCCGGACUAUAAGCUAC----------------------------AUAUAAGCCCUCUCCUUGGCACUGCGUAAACAU .((((((((....))).......(((..(((......)))..))).......))...----------------------------......(((........)))...)))....... ( -18.00) >consensus CCGAUUGCGAUCUCGCCAUUUCCCCGUAUCUUAUCAUAGACCCGGACUAUAAGCUAUGUACAUA_____________________GUAUAAGCCCUCUCCUUGGCACCGCGUAAACAU .....((((..............(((..(((......)))..)))..............................................(((........)))..))))....... (-11.23 = -10.73 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:31 2006