Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,647,803 – 16,647,895 |
Length | 92 |
Max. P | 0.553081 |
Location | 16,647,803 – 16,647,895 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 77.95 |
Mean single sequence MFE | -25.80 |
Consensus MFE | -17.74 |
Energy contribution | -17.86 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.43 |
Structure conservation index | 0.69 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16647803 92 - 27905053 AGGGUGUCCACGGUAGACCGUAGCUUCAAUCUUUAAAACACCCUAAUUAUGCCCAACUGCAUUUGGGGUGUUCCUUGAGC-----------UAAA----UAUUAGCG ((((.....((((....))))...............((((((((((..((((......))))))))))))))))))..((-----------((..----...)))). ( -26.50) >DroSec_CAF1 347 92 - 1 AGGGUGUCCACGGUAGACCGUAGCUUCAAUCUUGAAAACACCCUAAUUUUGCCCAACUGCAUUUGGGGUGUUCCUUGAGC-----------UAAA----UAUUAGCG ((((.....((((....))))...((((....))))((((((((((...(((......))).))))))))))))))..((-----------((..----...)))). ( -26.60) >DroSim_CAF1 348 92 - 1 AGGGUGUCCACAGUAGACCGUAGCUUCAAUCUUGAAAACACCCUAAUUUUGCCCAACUGCAUUUGGGGUGUUCCUUGAGC-----------UAAA----UAUUAGUG ........(((((((.....(((((.(((....((..(((((((((...(((......))).))))))))))).))))))-----------))..----)))).))) ( -23.70) >DroEre_CAF1 354 103 - 1 AGGGUGUCCAUGGCAGACCGUAAUUUGAAUCCCCGAAAUACCCUAAUUAUGCCCAACUGCACUUGGGGUGUUCCUUCAGGUGUUCAACUGCUAAGCAUA----AACG .(..(((.(.((((((........(((((..((.((((((((((((...(((......))).)))))))))...))).))..))))))))))).).)))----..). ( -29.50) >DroYak_CAF1 343 107 - 1 AUGGUGUCCAUGGCAGACCGUAAUUUGAAUCCCCCAAAUACCCUAAUUAUGCCCAACUGCAUUUGCGGUGUUCCCUGAGCUGAUCAACUGCUAACCAAAUAUUAUGG .((((.....(((((((((((((((((.......))))).........((((......)))).))))))((((...)))).......)))))))))).......... ( -22.70) >consensus AGGGUGUCCACGGUAGACCGUAGCUUCAAUCUUCAAAACACCCUAAUUAUGCCCAACUGCAUUUGGGGUGUUCCUUGAGC___________UAAA____UAUUAGCG ((((.....((((....))))...............((((((((((...(((......))).))))))))))))))............................... (-17.74 = -17.86 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:25 2006