Locus 6352

Sequence ID 3R_DroMel_CAF1
Location 16,646,713 – 16,646,830
Length 117
Max. P 0.574206
window10359

overview

Window 9

Location 16,646,713 – 16,646,830
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.87
Mean single sequence MFE -24.39
Consensus MFE -18.68
Energy contribution -19.84
Covariance contribution 1.16
Combinations/Pair 1.19
Mean z-score -1.32
Structure conservation index 0.77
SVM decision value 0.08
SVM RNA-class probability 0.574206
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16646713 117 - 27905053
CAUUAUCCAUCAAUGGAGCUUUAGGGUAUACGAGU--AAAAAUGUCAUAAAUAAAUCAUAAAAGUGAAGGGAGGUAUUUUGUUGUACCGCAAACCUAAGGCUU-AAUUAGGAAAAAAGUC
.....(((...(((.((((((((((..........--..................((((....)))).....(((((......))))).....))))))))))-.))).)))........ ( -24.40)
>DroSec_CAF1 203260 118 - 1
CAUUAUCCAUCAAUGGAGCUUUGGGGUAUAUGAGU--AAAAAUGUCAUAAAUAAAUCAUAAAAGUGAAGGGAGGUAUUUUGUUGUACCUCAAACCUAAGGCUUGAAUUAGUAAAGAAGUC
.....((((....))))((((((((...(((((..--.......)))))......((((....))))...(((((((......)))))))...))))))))................... ( -27.20)
>DroSim_CAF1 209851 117 - 1
CAUUAUCCAUCAAUGGAGCUUUGGGGUAUAUGAGU--UAAAAUGUCAUAAAUAAAUCAUAAAAGUGAAGGGAGGUAA-UUGUUGUACCUCAAACCUAAGGCUUGAAUUAGUAAAGAAGUC
.....((((....))))((((((((...(((((..--.......)))))......((((....))))...((((((.-......))))))...))))))))................... ( -24.80)
>DroEre_CAF1 207162 105 - 1
--------------UGAGCUUUGGCGGUUAUGGGUGUCUUGGUGUCUUAAAUAAAUCUCUAAAGUUAUU-UAGGUAUGUUGUUGUACCUCAAAUAAAAAGCUUGAAUUAGGGAAGAAGUU
--------------...(((..((((.(....).))))..))).((((...(((.((.......(((((-(((((((......)))))).)))))).......)).)))...)))).... ( -19.64)
>DroYak_CAF1 206551 118 - 1
CACUAUCUAUCAGUGGAGCUUCGGGGUAUAUAAGU--AGAAGUGUCAUAAAUAAAUCAUUAAUGUGAUGGGAGGUAUUUUGUUGUACCUCGAAUCUAAAGCUUGAAUAAGGGAAGAAGUA
.(((.(((.((..(.(((((((((((((((.....--.(((((..(........(((((....)))))....)..)))))..))))))))))......))))).).....)).)))))). ( -25.90)
>consensus
CAUUAUCCAUCAAUGGAGCUUUGGGGUAUAUGAGU__AAAAAUGUCAUAAAUAAAUCAUAAAAGUGAAGGGAGGUAUUUUGUUGUACCUCAAACCUAAGGCUUGAAUUAGGAAAGAAGUC
...............((((((((((..............................((((....))))...(((((((......)))))))...))))))))))................. (-18.68 = -19.84 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:24 2006