Locus 6351

Sequence ID 3R_DroMel_CAF1
Location 16,640,881 – 16,640,981
Length 100
Max. P 0.874372
window10358

overview

Window 8

Location 16,640,881 – 16,640,981
Length 100
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 71.33
Mean single sequence MFE -23.92
Consensus MFE -14.00
Energy contribution -14.03
Covariance contribution 0.03
Combinations/Pair 1.32
Mean z-score -1.59
Structure conservation index 0.59
SVM decision value 0.89
SVM RNA-class probability 0.874372
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16640881 100 - 27905053
AUAGCCAAUGCUGAGUUGAUACUCGAUGCCAGUAUGCACGAUGAGUUCGUCGAGCUGCUUAAGUAAGUAAAAU----------UAUUUAAAGCAGAGCAGAAGAAUUUGU
...((..((((((.((((.....))))..))))))))...(..(((((.(((..((((((((((((......)----------))))).))))))..).)).)))))..) ( -27.80)
>DroSec_CAF1 197329 100 - 1
AUAGCCAAUGCUGAGCUGAUACUCGAUGCCAGUAUGCACGAUGAGUUCGUCGAGCUGCUUAUGUAAGUAAAAA----------UAUUUAAAGCAGAGCAAUAGAAUUUGU
...((..((((((.((...........)))))))))).(((((....)))))..((((((...((((((....----------)))))))))))).((((......)))) ( -23.70)
>DroSim_CAF1 203917 100 - 1
AUAGCCAAUGCUGAGUUGAUACUCGAUGCCAGUAUGCACGAUGAGUUCGUCGAGCUGCUUAAGUAAGUAAAAA----------UAUUUAAAGCAGAGCAAUAGAAUUUGU
...((..((((((.((((.....))))..)))))))).(((((....)))))..(((((((((((........----------))))).)))))).((((......)))) ( -25.00)
>DroWil_CAF1 220709 89 - 1
AUCAAUAAUGCCGAAUUUGUACUCGAUGCCAGCAAGCAUGAUGAAUUUGUGGACUUGCUUAUGUAAGUUAAUU----------AAUUGGAAGUACAAAA-----------
...............((((((((.....((((....((..(.....)..))(((((((....)))))))....----------..)))).)))))))).----------- ( -19.00)
>DroYak_CAF1 199938 86 - 1
AUAGCCAAUGCUGAGUUGAUACUCGAUGCCAGCAUGCACGAUGAGUUCGUCGAGCUUCUCAAGUAAGUAAAGA----------UAUUUCAAACAGA--------------
.......((((((.((((.....))))..))))))((.(((((....))))).))..................----------.............-------------- ( -18.80)
>DroPer_CAF1 207981 95 - 1
AUCAGCAAUGCCGAGUUUGUGCUCGAUGCCAGCAUGCACGAUGCAUUUGUCGAGCUGCUCUUGUAAGCUGACACAAAGACAAUCGUUUACGGCAA---------------
........((((((((....((((((((...((((.....))))...)))))))).))))..((((((.((...........)))))))))))).--------------- ( -29.20)
>consensus
AUAGCCAAUGCUGAGUUGAUACUCGAUGCCAGCAUGCACGAUGAGUUCGUCGAGCUGCUUAAGUAAGUAAAAA__________UAUUUAAAGCAGAGCA___________
........((((((((....))))..(((.((((.((.(((((....))))).))))))...))).........................))))................ (-14.00 = -14.03 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:23 2006