| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,624,198 – 16,624,297 |
| Length | 99 |
| Max. P | 0.989008 |
| Location | 16,624,198 – 16,624,297 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 69.96 |
| Mean single sequence MFE | -23.02 |
| Consensus MFE | -13.21 |
| Energy contribution | -12.68 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.858457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16624198 99 + 27905053 UCUGUAUGUAUAUGCAUAGCCUGCCAAUGGCUAUGCUGUUUGA-----UAUUUAUAUUUGCUAUUUGAUGUUAAUAUUGAUGAUGAGGAGGAGGAGAGCUAAGG (((.(((......((((((((.......))))))))...(..(-----((((.(((((........))))).)))))..)..))).)))............... ( -21.00) >DroPse_CAF1 184336 87 + 1 --UGUAUGUACAUGCAUAUAC---AUAUAUAUGUGCU---CGAACCAUCGCUGCCAUCUGCCAGACGAUGCUGAUGGU--AGAUGAG-------AAAGCGAAGG --.....(((((((.(((...---.))).))))))).---....((.(((((..(((((((((...........))))--)))))..-------..))))).)) ( -28.00) >DroSec_CAF1 180587 99 + 1 UCUGUAUGUAUAUGCAUAGCCUGCCAAUGGCUAUGCUAUUUGA-----UAUUGAUAUUUGCUAUUUGAUGUUAAUAUUGAUGAUGAGGAGGAGGAGAGCCAAGG (((.(((......((((((((.......))))))))...(..(-----((((((((((........)))))))))))..)..))).)))...((....)).... ( -26.00) >DroSim_CAF1 186498 99 + 1 UCUGUAUGUAUAUGCAUAGCCUGCCAAUGGCUAUGCUAUUUGA-----UAUUGAUAUUUGCUAUUUGAUGUUAAUAUUGAUGAUGAGGAGGAGGAGAGCCAAGG (((.(((......((((((((.......))))))))...(..(-----((((((((((........)))))))))))..)..))).)))...((....)).... ( -26.00) >DroEre_CAF1 183923 77 + 1 UCUGUAUGUAUAUGCAUAGCCGCCCAAGGGCUAUGCUGUUUGA-----UA-------------UUUGAUGUUAAUAUUGAUG---AGGAGGA-----GCAAG-G ......(((....((((((((.......))))))))...(..(-----((-------------((.......)))))..)..---.......-----)))..-. ( -17.20) >DroYak_CAF1 182391 81 + 1 UCUGUAUGUAUAUGCAUAGCCCCCCGAGGGCUAUGCUGUUUGA-----UA-------------UUUGAUGUUAAUAUUGAUGAUGAGAAGGA-----GCUAGUG (((..........(((((((((.....)))))))))...(..(-----((-------------((.......)))))..).....)))....-----....... ( -19.90) >consensus UCUGUAUGUAUAUGCAUAGCCUGCCAAUGGCUAUGCUGUUUGA_____UAUUGAUAUUUGCUAUUUGAUGUUAAUAUUGAUGAUGAGGAGGA__AGAGCCAAGG .............((((((((.......)))))))).................................................................... (-13.21 = -12.68 + -0.52)
| Location | 16,624,198 – 16,624,297 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 69.96 |
| Mean single sequence MFE | -16.10 |
| Consensus MFE | -13.38 |
| Energy contribution | -12.85 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.83 |
| SVM decision value | 2.14 |
| SVM RNA-class probability | 0.989008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16624198 99 - 27905053 CCUUAGCUCUCCUCCUCCUCAUCAUCAAUAUUAACAUCAAAUAGCAAAUAUAAAUA-----UCAAACAGCAUAGCCAUUGGCAGGCUAUGCAUAUACAUACAGA ........................................................-----.......((((((((.......))))))))............. ( -14.20) >DroPse_CAF1 184336 87 - 1 CCUUCGCUUU-------CUCAUCU--ACCAUCAGCAUCGUCUGGCAGAUGGCAGCGAUGGUUCG---AGCACAUAUAUAU---GUAUAUGCAUGUACAUACA-- ((.(((((..-------.((((((--.(((...........))).)))))).))))).))....---..........(((---(((((....))))))))..-- ( -21.60) >DroSec_CAF1 180587 99 - 1 CCUUGGCUCUCCUCCUCCUCAUCAUCAAUAUUAACAUCAAAUAGCAAAUAUCAAUA-----UCAAAUAGCAUAGCCAUUGGCAGGCUAUGCAUAUACAUACAGA ........................................................-----.......((((((((.......))))))))............. ( -14.20) >DroSim_CAF1 186498 99 - 1 CCUUGGCUCUCCUCCUCCUCAUCAUCAAUAUUAACAUCAAAUAGCAAAUAUCAAUA-----UCAAAUAGCAUAGCCAUUGGCAGGCUAUGCAUAUACAUACAGA ........................................................-----.......((((((((.......))))))))............. ( -14.20) >DroEre_CAF1 183923 77 - 1 C-CUUGC-----UCCUCCU---CAUCAAUAUUAACAUCAAA-------------UA-----UCAAACAGCAUAGCCCUUGGGCGGCUAUGCAUAUACAUACAGA .-.....-----.......---...................-------------..-----.......(((((((((....).))))))))............. ( -14.30) >DroYak_CAF1 182391 81 - 1 CACUAGC-----UCCUUCUCAUCAUCAAUAUUAACAUCAAA-------------UA-----UCAAACAGCAUAGCCCUCGGGGGGCUAUGCAUAUACAUACAGA .......-----.............................-------------..-----.......(((((((((.....)))))))))............. ( -18.10) >consensus CCUUAGCUCU__UCCUCCUCAUCAUCAAUAUUAACAUCAAAUAGCAAAUAUCAAUA_____UCAAACAGCAUAGCCAUUGGCAGGCUAUGCAUAUACAUACAGA ....................................................................((((((((.......))))))))............. (-13.38 = -12.85 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:22 2006