Locus 6349

Sequence ID 3R_DroMel_CAF1
Location 16,619,664 – 16,619,754
Length 90
Max. P 0.927361
window10355

overview

Window 5

Location 16,619,664 – 16,619,754
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 76.90
Mean single sequence MFE -14.88
Consensus MFE -8.59
Energy contribution -8.92
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.58
SVM decision value 1.18
SVM RNA-class probability 0.927361
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16619664 90 + 27905053
GUAAACAAAAAUCCAAUUGGCUAUACCAACAAACAACAUUGGCUAAUUGCAGGGAAAAAUACUACAAUAGUUUGU-UUACUAGGCUAGGUU
(((((((((....((((((((((................))))))))))..((........)).......)))))-))))........... ( -17.29)
>DroSec_CAF1 176080 77 + 1
GUAAACAAAAAUCCAAUUGGCUAAACCAACAAAAAACAUUGGCUAAUUGCAGGGAACAAGAU---------UAGU-UUACUAGGCUA----
((((((...(((((((((((((((..............)))))))))))..(....)..)))---------).))-)))).......---- ( -15.94)
>DroSim_CAF1 181606 77 + 1
GUAAACAAAAAUCCAAUUGGCUAAACCAACAAAGAACAUUGGCUAAUUGCAGGGACCAAGAU---------UAGU-UUACUAGGCUA----
((((((...(((((((((((((((..............)))))))))))..(....)..)))---------).))-)))).......---- ( -14.94)
>DroEre_CAF1 179471 72 + 1
GUAAACAAAAAUCCAAUUGGCUAAACCAAC----AACAUUGGCUAAUUGCAGGGAACAAGUC---------UACU-UGAUCAGGCU-----
..............((((((((((......----....))))))))))((...((.((((..---------..))-)).))..)).----- ( -14.90)
>DroYak_CAF1 178014 72 + 1
GUAAACAAAAAUCCAAUUGGCUAAACCAAA----AACAUUGGCUAAUUGCAGGGAACAAGAC---------UAAU-UGAUCAGACU-----
.............(((((((((((......----....)))))))))))....((.(((...---------...)-)).)).....----- ( -11.70)
>DroAna_CAF1 174849 71 + 1
UUAAACAAAAAUCCAAUUGGCGAAUACAAUA------AUUGGCUAAUUGCAAGGACUAAGCU---------UAGAAAGGUUAGCUU-----
.............((((((((.(((......------))).))))))))..(((.((((.((---------.....)).)))))))----- ( -14.50)
>consensus
GUAAACAAAAAUCCAAUUGGCUAAACCAACA___AACAUUGGCUAAUUGCAGGGAACAAGAC_________UAGU_UGACUAGGCU_____
.............(((((((((((..............))))))))))).......................................... ( -8.59 =  -8.92 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:20 2006