Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,617,200 – 16,617,299 |
Length | 99 |
Max. P | 0.983848 |
Location | 16,617,200 – 16,617,299 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 74.31 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -12.31 |
Energy contribution | -12.28 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.33 |
Mean z-score | -2.58 |
Structure conservation index | 0.44 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.983848 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16617200 99 + 27905053 CCCGUUUAUCUCAUUCCG-CGAGUGCGUGCGACGGUGCGUA------AGUUGCCAAUUUUUCGUAUUUCUCGUAUUUCGCACAUUCUCGCGACCCAUUUUUUACCA ................((-((((...((((((.((((((..------((.(((.........))).))..))))))))))))...))))))............... ( -26.10) >DroPse_CAF1 176836 81 + 1 ------UCUCUUUUUCGGCCGGGUGCGUGAGGCGAUGCGUAA-----AGCUGCGAAAU---------U--UCUGUUUCGCGAAUUCUCGCGACCCAUUUC---CAA ------..........((..((((.(((((((....((....-----.))((((((((---------.--...))))))))...)))))))))))....)---).. ( -27.20) >DroSec_CAF1 173626 88 + 1 CCCAUUUAUCUCAUUCCG-CGAGUGCGUGCGACGGUGCGUA------AGUUGCCAAUU-----------UCGUAUUUCGCACAUUCUCGCGACCCAUUUUUUUCGA ................((-((((...((((((.((((((.(------(((.....)))-----------)))))))))))))...))))))............... ( -26.10) >DroEre_CAF1 177059 88 + 1 CCCAUUCAUCUCAUUCCG-CGAGUGCGUGCGACGAUGCGUG------AGUUGCGAAUU---------UCUCGUAUUUCGCACAAGCUCGCGACCCAUUUU--UGCA ................((-(((((..((((((.((((((.(------((........)---------)).))))))))))))..))))))).........--.... ( -31.70) >DroYak_CAF1 175641 95 + 1 CCCAUUUAUCUCAUUCCG-CGAGUGCGUGCGACGGUGCGUAAGUGUAAGUUGCGAAUU---------UCUCGUAUUUCGCACACUCUCGCGACCCAUUUUU-UCCA ................((-((((.(.((((((..(..(....)..)....(((((...---------..)))))..)))))).).))))))..........-.... ( -29.10) >DroPer_CAF1 182817 81 + 1 ------UCUCUUUUUCGGCCGGGUGCGUGAGGCGAUGCGUAA-----AGCUGCGAAAU---------U--UCUGUUUCGCGAAUUCUCGCGACCCAUUUC---CAA ------..........((..((((.(((((((....((....-----.))((((((((---------.--...))))))))...)))))))))))....)---).. ( -27.20) >consensus CCCAUUUAUCUCAUUCCG_CGAGUGCGUGCGACGAUGCGUA______AGUUGCGAAUU_________U_UCGUAUUUCGCACAUUCUCGCGACCCAUUUU__UCCA ................((.((((...((((((.((((((...............................))))))))))))...))))))............... (-12.31 = -12.28 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:19 2006