| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,614,672 – 16,614,764 |
| Length | 92 |
| Max. P | 0.957833 |
| Location | 16,614,672 – 16,614,764 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 78.93 |
| Mean single sequence MFE | -18.84 |
| Consensus MFE | -11.28 |
| Energy contribution | -11.20 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.957833 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16614672 92 - 27905053 CUACCUCAAUAAAUUUGAUGUUGAUGCCGGCGAUA----UGCGCAAAC---AUACACAGCCAGCCAUACAUACACACAUGCAUAUCCUGGCAUAUCCUG- (.((.((((.....)))).)).)(((((((.((((----(((((....---.......))..(.....)..........))))))))))))))......- ( -20.80) >DroSec_CAF1 171141 72 - 1 CUACCUCAAUAAAUUUGAUGUUGAUGCCGGCGAUA----UGCGCAAAC---AUA--------------------CACAUGCAUAUCCUGGCAUAUCCUG- (.((.((((.....)))).)).)(((((((.((((----((((.....---...--------------------....)))))))))))))))......- ( -21.70) >DroSim_CAF1 176302 82 - 1 CUACCUCAAUAAAUUUGAUGUUGAUGCCGGCGAUA----UGCGCAAAC---AUACACACCCA----------UACACAUGCAUAUCCUGGCAUAUCCUG- (.((.((((.....)))).)).)(((((((.((((----((((.....---...........----------......)))))))))))))))......- ( -21.05) >DroEre_CAF1 174630 80 - 1 CUACCUCAAUAAAUUUGACGUUGAUGCCGGCGAUA----UGCGCAAAC---ACACACAGCCA----------U--ACAUGUAUAUCCUGGCAUAUCCUG- (.((.((((.....)))).)).)(((((((.((((----((((.....---...........----------.--...)))))))))))))))......- ( -19.15) >DroYak_CAF1 171329 85 - 1 CUACCUCAAUAAAUUUGAUGUUGAUGCCGGCGAUACACAUACACAUAC---AUACACAGCCA----------U--AUAUGCAUAUCCUGGCAUAUCCUGC (.((.((((.....)))).)).)(((((((.((((..((((.......---...........----------.--.))))..)))))))))))....... ( -16.05) >DroAna_CAF1 169787 79 - 1 CUACCUCAAUAAAUUUUAUGUUGAUGCCGGCGAUA----UGCGCAAAAAAAACACAAAGACA--------UACACACAGACAUGUCCUGGC--------- .....((((((.......)))))).(((((.((((----(((....................--------........).)))))))))))--------- ( -14.29) >consensus CUACCUCAAUAAAUUUGAUGUUGAUGCCGGCGAUA____UGCGCAAAC___AUACACAGCCA__________U_CACAUGCAUAUCCUGGCAUAUCCUG_ .....((((((.......))))))((((((.((((....((...................................))....))))))))))........ (-11.28 = -11.20 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:18 2006