| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,607,870 – 16,607,960 |
| Length | 90 |
| Max. P | 0.723019 |
| Location | 16,607,870 – 16,607,960 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 84.54 |
| Mean single sequence MFE | -23.60 |
| Consensus MFE | -14.28 |
| Energy contribution | -13.96 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.723019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16607870 90 + 27905053 GUGGCAGUGUGUGUGUGUGUGGAACGCAUUGUGGAACGUCGACAGUGAAUGCGAAAUAU----ACGUUGCACAGGAAAAAAAGAAGAGUUUAAU (((.((((((((((...((((.....((((((.(.....).))))))..))))..))))----)))))))))...................... ( -21.20) >DroSec_CAF1 164301 85 + 1 GUGGCU--GUGCUUGUGUGUGGAACGCAUUGUGGAACGUCGACAGUGAAUUCGAAAUGU----ACGUUGCACAGGAAA-AAAGAAU--GUUAAU ....((--((((.((((..(.(((..((((((.(.....).))))))..)))...)..)----)))..))))))....-.......--...... ( -24.50) >DroSim_CAF1 169143 86 + 1 GUGGCU--GUGCUUGUGUGUGGAACGCAUUGUGGAACGUCGACAGUGAAUGCGAAAUAU----ACGUUGCACAGGAAAAAAAGAAU--GUUAAU ....((--((((.(((((((....((((((((.(.....).)))....)))))..))))----)))..))))))............--...... ( -23.40) >DroEre_CAF1 167941 88 + 1 GUGGCU--GUG--UCUGUGUGGAACGUAUUGUGGAACGUCGACAGUGAAUGCGAAAUAUACAUACGUUGCACAGAAAAAAA--AGGAGUCUUAU ..((((--.(.--(((((((..(((((((.(((.....(((.((.....)))))....)))))))))))))))))......--.).)))).... ( -24.30) >DroYak_CAF1 164787 83 + 1 GUGACU--GUG--UCUGUGUGGAACGCAUUGUGGAACGUCGACAGUGCAUGCGAAAUAU----ACGUUGCACAGGAAAAAA-UAUCAG--UUAU ((((((--(..--(((((((.....(((((((.(.....).)))))))..(((......----.))).)))))))......-...)))--)))) ( -24.60) >consensus GUGGCU__GUG__UGUGUGUGGAACGCAUUGUGGAACGUCGACAGUGAAUGCGAAAUAU____ACGUUGCACAGGAAAAAAAGAAGAGGUUAAU ...............(.((((.((((((((((.(.....).)))))).((.....)).......)))).)))).)................... (-14.28 = -13.96 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:15 2006