| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,604,658 – 16,604,750 |
| Length | 92 |
| Max. P | 0.669857 |
| Location | 16,604,658 – 16,604,750 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.23 |
| Mean single sequence MFE | -11.27 |
| Consensus MFE | -9.28 |
| Energy contribution | -8.70 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16604658 92 + 27905053 CGCAAACGACCAUGCGAAAAUAUUGCAACCACAAAUCUGGAACUUUUUACACAAACGGUUAAGGAAUCUCUAA---CCA---------UAAACA-----AC-ACAUC--UUU ((((........))))............(((......)))................(((((..(...)..)))---)).---------......-----..-.....--... ( -10.30) >DroVir_CAF1 186544 92 + 1 CGCAAACGACCAUGCGAAAAAAUCGCAGUUACAAAUCUGGAACUUUUUACACAAACGGUUAAAA-AU--CAAA---GCAAAAUAUCAA------------CGAAAUC--UAU .......((((.(((((.....)))))(((.((....)).))).............))))....-..--....---............------------.......--... ( -10.70) >DroEre_CAF1 164723 90 + 1 CGCAAACGACCAUGCGAAAAUAUUGCAACCACAAAUCUGGAACUUUUUACACAAACGGUUAAGGAAU--CUAA---CCA---------UAAACA-----AC-ACAUC--UUU .......((((.(((((.....))))).(((......)))................))))..((...--....---)).---------......-----..-.....--... ( -10.40) >DroYak_CAF1 160961 90 + 1 CGCAAACGACCAUGCGAAAAUAUUGCAACCACAAAUCUGGAACUUUUUACACAAACGGUUAAGGAAU--CUAA---CCA---------UAAACA-----UC-ACAUC--UUU .......((((.(((((.....))))).(((......)))................))))..((...--....---)).---------......-----..-.....--... ( -10.40) >DroAna_CAF1 160070 102 + 1 CGCAAACGACCAUGCGAAAAUAUUGCAACCACAAAUCUGGAACUUUUUACACAAACGGUUAAGAUUCAUCUAGAGCCCA---------UAAACAAACAAAC-ACAUUGUAUU .((.........(((((.....)))))........((((((...(((((.((.....)))))))....))))))))...---------.......((((..-...))))... ( -12.10) >DroPer_CAF1 170627 81 + 1 CGCAAACGACCAUGCGAAAAUAUUGCAAUUACAAAUCUGGAACUUUUUACACCAACGGUUAAAU-----CAAC---CGG---------CAAUCA-----GC-AG-------- ((((........)))).....(((((...........(((...........))).(((((....-----.)))---)))---------))))..-----..-..-------- ( -13.70) >consensus CGCAAACGACCAUGCGAAAAUAUUGCAACCACAAAUCUGGAACUUUUUACACAAACGGUUAAGGAAU__CUAA___CCA_________UAAACA_____AC_ACAUC__UUU .......((((.(((((.....))))).(((......)))................)))).................................................... ( -9.28 = -8.70 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:15 2006