Locus 6342

Sequence ID 3R_DroMel_CAF1
Location 16,598,494 – 16,598,588
Length 94
Max. P 0.500000
window10346

overview

Window 6

Location 16,598,494 – 16,598,588
Length 94
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 84.37
Mean single sequence MFE -27.61
Consensus MFE -18.87
Energy contribution -19.68
Covariance contribution 0.81
Combinations/Pair 1.30
Mean z-score -2.12
Structure conservation index 0.68
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16598494 94 - 27905053
CAAUGGGCUUGAUAA---CGGGUACAUUUCUGGGCUGAAGGUCCGAUAUGGAUCGCGACCAAGGUUGUGGGAAACUGCAAUAAAAGUAAGUCAAAAU
.((((..((((....---))))..))))....((((...((((((((....)))).))))...((((..(....)..)))).......))))..... ( -28.50)
>DroSec_CAF1 154971 94 - 1
CAAUGGGCUUGAUAA---CGAGUACAUUUCCGGGUUGAAGGUCCGAUAUGAAUCGCGACCCAGAUUGUGGGAAACUGCAAUAAAGGUAAAUCAAUGU
.((((..((((....---))))..)))).....(((((.((((((((....)))).))))...((((..(....)..)))).........))))).. ( -27.70)
>DroSim_CAF1 159820 94 - 1
CAAUGGGCUUGAUAA---CGAGUACAAUUCCGGGUUGAAGGUCCGAUAUGAAUCGCGACCCAGGUUUUGGGAAACUGCAAUAAAGGUAAGUCAAUGU
.....((((((....---...((((((..((((((((....((......))....)))))).))..)))(....))))........))))))..... ( -21.86)
>DroEre_CAF1 158485 97 - 1
CAAUGGGCUUGAUAAGGAUGAGUACAUUUCCGGGCUGAAGGUGCGAUAUGAAUCGCGACCCAGGUUGUGGGAAACUGCAAUAGAGGUAAGUCGAAUA
.....((((((....(((..........)))...(((..((((((((....))))).))))))((((..(....)..)))).....))))))..... ( -27.50)
>DroYak_CAF1 154888 97 - 1
CAAUGGGCUCGAUAAUGACGAGUACAUUUCCGGGCUGAAGGUCCGAUACGAAUCGCGACCCAGGUUGUGGGAAACUGCAAUAAAAGAAAGUCGAAGA
.((((..((((.......))))..))))....((((...((((((((....)))).))))...((((..(....)..)))).......))))..... ( -30.10)
>DroAna_CAF1 152323 97 - 1
CAUUGGGCUGGAUAAGGACGUGUACAUUUCCGGGCUAAAGGUUCGAUAAGAGUCUCGAGCCAAGUUGUGGGAAACUGCAAUGAAAUUAAAGGGGAAU
..((((.(((((...(........)...))))).)))).(((((((........)))))))..((((..(....)..))))................ ( -30.00)
>consensus
CAAUGGGCUUGAUAA___CGAGUACAUUUCCGGGCUGAAGGUCCGAUAUGAAUCGCGACCCAGGUUGUGGGAAACUGCAAUAAAAGUAAGUCAAAGU
.((((..((((.......))))..))))....((((...((((((((....)))).))))...(((((((....))))))).......))))..... (-18.87 = -19.68 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:12 2006